Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0847
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44015| Best HMM Match : TPR_2 (HMM E-Value=7.3e-07)                 33   0.30 
SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)                31   1.2  
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_13461| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4)                     29   4.9  
SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)                   28   6.5  
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)                   28   8.6  

>SB_44015| Best HMM Match : TPR_2 (HMM E-Value=7.3e-07)
          Length = 635

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 22/59 (37%), Positives = 31/59 (52%)
 Frame = +2

Query: 104 DSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNSWSTPTSSG 280
           DSK E D+ + + V  Y+ AV        DK S V+ ++ N L+ NNK    S PT+ G
Sbjct: 109 DSKDESDVLDMVYVL-YNEAVVCYNP---DKASAVLNHIENVLMVNNKQADTSQPTTQG 163


>SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
          Length = 355

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +3

Query: 402 QQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQGLLQIVNTQRNQYLTLSVKTTPTQ 569
           QQQ+WQ   R+WQ Q   +SQLE +    E Q   Q+   Q    ++L  K    Q
Sbjct: 301 QQQQWQQQQRQWQ-QQLQQSQLEQQQRQQEMQLQQQMQIAQTKLLMSLIEKMNKEQ 355


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 29/117 (24%), Positives = 44/117 (37%)
 Frame = +2

Query: 188  EDKKSEVITNVVNKLIRNNKMNSWSTPTSSGCKAPRIXXXXXXXXXXXXXXPKTTLS*CT 367
            EDK  E  T    K     +  +  T T+S  K P I              P TT    T
Sbjct: 1417 EDKTREEATT---KPTTTTRKTTIPTTTASETKPPTIRKTTTATTTVPATKPPTTRK-TT 1472

Query: 368  SATVLL*RCAMTATTMADLPTAMARTRRVQKSAGSSFLCGRTTRSTSDCEHSA*SVF 538
            +AT    R     TT A+ PT +   RR+      S     T+++ ++    + +V+
Sbjct: 1473 TATTTQGRTTRKPTTTAEPPTTVDNLRRISTKIKDSTSRPETSQTQTEAPGHSTAVY 1529


>SB_13461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 385 LTLRDDSNNDGR-LAYGDGKDKT-SPKVSWKFVPLWENNKVYFRL*TLSVISI*RCQLKQ 558
           LTLRDD+    R L   DG ++   P   +++VPL + N +  ++   + +    C +K 
Sbjct: 170 LTLRDDTVPVKRNLGVFDGPEQRFCPAGVYEYVPLEKGNGMRLQINAQNCVHCKTCDIKD 229

Query: 559 PRPKTTW 579
           P     W
Sbjct: 230 PSQNINW 236


>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1353

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 386 KARPSRLYISLMLFSAKISVNSTGKHSRTISLEPCIQS 273
           KA+    +     F++ +S   T  H R++S +PC+Q+
Sbjct: 556 KAKSEGFFRHKQSFASAVSSKKTAIHHRSVSEDPCVQT 593


>SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4)
          Length = 235

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -2

Query: 537 NTDYAECSQSEVDLVVLPQRNELPADFWTRLVLAIAVGKSAIVVAVIAQRQ 385
           N D   CS  ++ LV L    ++PA     +V  +  GKS ++ A++ + +
Sbjct: 176 NLDVPTCSLIDLSLVALSINLDVPAGSLVAVVGQVGCGKSTLLSALLGETE 226


>SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)
          Length = 404

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 87  TEPQSPTPNSKTIFTTASSLPITTMP--LKKANRSTRTRRAKSSQ 215
           T P  PTP  K   +  +++P+T +P    K  +  +T+ AK S+
Sbjct: 244 TAPPKPTPPPKPAPSLKTTIPLTDVPPLTSKEKKHEKTKTAKPSK 288


>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
          Length = 667

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +3

Query: 81  MPTEPQSPTPNSKTIFT-----TASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETT 245
           +PT  ++PTP ++ +FT     TA  +P T        + T  R   + Q+  T    TT
Sbjct: 181 LPTSKRTPTPATEPVFTTQRTPTAKQVPTTERIPTSEQKPTTKRVPTTGQIQATPEMPTT 240

Query: 246 R 248
           +
Sbjct: 241 K 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,678,452
Number of Sequences: 59808
Number of extensions: 371921
Number of successful extensions: 1276
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)