Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0845
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    25   6.8  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    25   6.8  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   9.0  
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    25   9.0  

>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 340 RPFKKVINMEKSLKTSFKLLLQNIK 266
           +PF KVIN    + T + L L N+K
Sbjct: 69  KPFIKVINYNHLMPTRYALELDNLK 93


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 377 ATLKTSLQNFNLKAI*KSNKHGKIT*NIFQTSFT 276
           + +   LQ  NL+A+ K + HG+    I  T+FT
Sbjct: 314 SVIAQQLQITNLEALNKLSSHGETLLQIMHTAFT 347


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 124 LYP*KKYIFTRFILASLVCM 65
           LYP +KY+    ++A+L+C+
Sbjct: 614 LYPGQKYLQVGLVIAALICV 633


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 340 RPFKKVINMEKSLKTSFKLLLQNIK 266
           +PF KV+N    + T + L L N+K
Sbjct: 69  KPFIKVVNYNHLMPTRYALELDNLK 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,753,545
Number of Sequences: 5004
Number of extensions: 29412
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)