Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0845
         (523 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21262| Best HMM Match : IL1_propep (HMM E-Value=9.4)                30   1.0  
SB_46401| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_21262| Best HMM Match : IL1_propep (HMM E-Value=9.4)
          Length = 306

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 481 LEXTLVLIQRRYCDVNVFXLRITLMFLDYVARRHW 377
           ++  L L +RRYCD  +F L+ T +   Y  + +W
Sbjct: 204 VQGQLALSKRRYCDFFIFTLKNTFVKRIYFEKNYW 238


>SB_46401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 502 CKALQKILEXTLVLIQRRYCDVNVFXLRITLMFLDYVAR 386
           CK  +K+ E   + + RR+ D  ++  ++   FLD  AR
Sbjct: 331 CKPWEKLTEEEQLSVYRRHMDNGIYEYKVFGSFLDINAR 369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,369,111
Number of Sequences: 59808
Number of extensions: 196143
Number of successful extensions: 312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)