Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0844
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    25   7.3  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 597 PHPPVWCCRGTFRAFSRIFYSVFSFLEF 514
           PHPP++    +F   S+IF S++  LEF
Sbjct: 568 PHPPLFSVSNSFDGPSQIF-SIYKALEF 594


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 128 RHSTFQSVGNEIY*HDIKNCFHCDMTKKRHKILS 27
           +H T  +  N+ + HD  NC H    +K  ++L+
Sbjct: 251 QHKTQGTDNNDSFYHDDTNCIHLSRLEKIRELLT 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,634
Number of Sequences: 5004
Number of extensions: 43606
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)