Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0844
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0905 - 8928261-8928875                                           29   4.3  
05_05_0391 - 24617389-24617508,24617854-24617919,24618156-246182...    29   4.3  
03_03_0046 + 14040331-14040801,14040915-14041050,14041159-140412...    28   7.5  
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696...    28   7.5  

>08_01_0905 - 8928261-8928875
          Length = 204

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 547 SREGSESPAATPDGGMGVDXRLRSXMVHIGHRWGD 651
           +R GSE+ AA  DG +G D R  + +V    R+GD
Sbjct: 35  ARVGSETGAARTDGEVGGDKRGVTSVVVCARRYGD 69


>05_05_0391 -
           24617389-24617508,24617854-24617919,24618156-24618204,
           24618855-24618922,24619041-24619086,24619187-24619280,
           24619373-24619435,24619722-24619844,24620370-24620403,
           24621106-24621168,24621447-24621545,24622398-24622454
          Length = 293

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 417 YFIFFELYCLEICFSVNVQNVFYLEC 340
           YF+ F L+CLE   S+ V  +  ++C
Sbjct: 235 YFVGFGLFCLESLLSIGVIQIMTIDC 260


>03_03_0046 +
           14040331-14040801,14040915-14041050,14041159-14041295,
           14041366-14041965
          Length = 447

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 125 VVPSKLKISARKGNVHGLLEAIFIRQRNDKPELALVIMVCDQRCRLLIYFFL 280
           V   +L I+  +G+   L E IF+ Q      + L+   C+   RLL+Y F+
Sbjct: 140 VAVKQLDIAGLQGHREWLAEVIFLGQFRHPHLVKLLGYCCEDEERLLVYEFM 191


>03_02_0952 +
           12666750-12666777,12666965-12667185,12669464-12669649,
           12670147-12670212,12670335-12670427,12670528-12670659,
           12670794-12670895,12670993-12671070,12671148-12671219,
           12672185-12672292,12672368-12672465,12672904-12672964,
           12673058-12673120,12673228-12673284,12673571-12673729,
           12674310-12674441,12674516-12674602,12674667-12674738,
           12675899-12675985,12676052-12676427,12676727-12676788,
           12676946-12677014,12677096-12677142,12677189-12677342,
           12677874-12677999
          Length = 911

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 590 PPSGVAAGLSEPSLESSTQCFHSW 519
           PP+G  +G S  SLE  + C  SW
Sbjct: 3   PPTGAVSGSSSSSLECVSSCRTSW 26


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,608,742
Number of Sequences: 37544
Number of extensions: 243970
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)