Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0844
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48591| Best HMM Match : Galactosyl_T (HMM E-Value=2.1e-33)          31   0.62 
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_48591| Best HMM Match : Galactosyl_T (HMM E-Value=2.1e-33)
          Length = 336

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -3

Query: 494 FGTLRRQL**FLIKYSLFSKCVIIFVILFSSNYIVWRYVSLLMYKMYF 351
           F T  R+   FL+   +  +CV IF++L +   +++RY    +YK+Y+
Sbjct: 6   FRTSYRRFLGFLLSRRV-QRCVCIFLVLLAVLILIYRYTQSSVYKIYY 52


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
 Frame = -2

Query: 423  FCYFIFFELYCLEICFSVNVQNVFY-LECMEALIR--DKALYITXXXXXXXXXXXXKSLH 253
            FCY IFF+    + C S++ +  FY L C+E ++R  D ++ +              SL 
Sbjct: 4766 FCYEIFFKSALSDHCKSLHAELDFYSLVCVEDVVRAGDVSVSLVAIVTFADHCKATLSLS 4825

Query: 252  LWSQTIMTKASSGLSFLCRIKIASSKPCTF 163
             W    +  +  G  F   I  +    C F
Sbjct: 4826 FWPAQKLCNSIPGALFPIWIGDSCDVRCVF 4855


>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 173 GLLEAIFIRQRNDKPELALVIMVCDQRCRLLIYF 274
           GL     I   +D PEL++ ++VC++ C L + F
Sbjct: 148 GLTSGGKIMDNSDSPELSVQVVVCEKGCGLPLLF 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,342,730
Number of Sequences: 59808
Number of extensions: 295662
Number of successful extensions: 663
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)