Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0844
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-12|ABO16466.1|  377|Caenorhabditis elegans F-box a prot...    31   0.95 
U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine rece...    29   2.9  
Z54342-11|CAA91146.1|  502|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z49913-4|CAA90147.1|  498|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AC024200-7|AAF36006.1|  332|Caenorhabditis elegans Hypothetical ...    28   6.7  
AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine re...    27   8.9  

>AC084159-12|ABO16466.1|  377|Caenorhabditis elegans F-box a protein
           protein 222 protein.
          Length = 377

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 224 ALVIMVCDQRCRLLIYFF-LFTLPIFYVIYKALSRISASIHSK*NTFCTLTEKHISR 391
           A +I +C   C L I F  +FT  IF +I+K   ++S++     + F T  +K I R
Sbjct: 264 AKIIQICGD-CELSIPFAKIFTAIIFLIIWKTYDKLSSAFFQHLDNFPTNLQKAIFR 319


>U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 13 protein.
          Length = 345

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
 Frame = -2

Query: 555 FSRIFYSVFSFLEFFERSETFWHTPKAVVMIFN*I*PIF*MRNY----FCYFIFFELYCL 388
           F   F +V+ F +F+  S + +  P  +  +F  +  ++   N       YFI   LY +
Sbjct: 13  FQITFNTVYRFSQFYTFSVSSFAVPGLIYFMFKRLFQLYFHGNLKTLLIAYFISILLYAV 72

Query: 387 EICFSVNVQNV--FYLECMEALIRDKALY 307
            +CF+   Q    F+++    LI +K L+
Sbjct: 73  MLCFAFGYQFFVPFFIKSNCDLIINKTLF 101


>Z54342-11|CAA91146.1|  502|Caenorhabditis elegans Hypothetical
           protein C08H9.5 protein.
          Length = 502

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 479 FGVCQNVSERSKNSKNENTE*KIREKALKVP 571
           FG+ +    RSKNSKNE  E ++ E A+K+P
Sbjct: 186 FGIIRKGFLRSKNSKNEEKESRL-EVAVKLP 215


>Z49913-4|CAA90147.1|  498|Caenorhabditis elegans Hypothetical
           protein ZK938.5 protein.
          Length = 498

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 479 FGVCQNVSERSKNSKNENTE*KIREKALKVP 571
           FG+ +    RSKNSKN+ TE ++ E A+K P
Sbjct: 182 FGIIRKGFLRSKNSKNKETESRL-EVAVKSP 211


>Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical
           protein T04B2.4 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = +2

Query: 197 RQRNDKPELALVIMVCDQRCRLLIYFFL------FTLPIFYVIYKALSRISASIH 343
           R R  K      I VC Q   LL++ F       F+   FY++Y ALS + ASI+
Sbjct: 252 RMREAKLFTMSTITVCVQMSVLLLFIFGGSDILGFSTDQFYMVYNALSDLYASIN 306


>AC024200-7|AAF36006.1|  332|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.8 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 435 MRNYFCYFIFFELYCLEICFSVNVQNVFYL--ECMEALIRDKALYI 304
           +R  FC+F FFE Y + +C   +  N   L  + +E  I+   LYI
Sbjct: 285 IRAVFCFFQFFEYY-VTVCVDESTDNYILLMNKVLEMSIKLLPLYI 329


>AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein40 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 140 LKISARKGNVHGLLEAIFIRQRNDKPELALVIMVCDQRCRLLIYFFLFTLPIFYVIY 310
           LKIS    ++ G+  A+FIR   +K  + + +M      R  I   L  LP +Y  +
Sbjct: 130 LKISMWFASIMGVFRALFIRYPFNK--IVISLMTIKNSIRTSILITLLILPFWYTSF 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,164,879
Number of Sequences: 27780
Number of extensions: 240720
Number of successful extensions: 717
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)