Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0842
         (393 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3UBH2 Cluster: Cytoplasmic membrane protein; n=1; Croc...    36   0.28 
UniRef50_Q54G20 Cluster: Putative uncharacterized protein; n=1; ...    35   0.48 
UniRef50_Q5CT06 Cluster: Predicted secreted protein, signal pept...    34   0.85 
UniRef50_A1EWZ5 Cluster: Putative uncharacterized protein; n=2; ...    32   3.4  
UniRef50_Q4GYH4 Cluster: Putative uncharacterized protein; n=1; ...    32   3.4  
UniRef50_Q4Z6X3 Cluster: Putative uncharacterized protein; n=3; ...    32   4.5  
UniRef50_UPI000049A4FB Cluster: hypothetical protein 25.t00017; ...    31   6.0  
UniRef50_Q4HKD1 Cluster: Sensor protein; n=2; Campylobacter|Rep:...    31   6.0  
UniRef50_Q4YMB3 Cluster: Putative uncharacterized protein; n=1; ...    31   7.9  

>UniRef50_A3UBH2 Cluster: Cytoplasmic membrane protein; n=1;
           Croceibacter atlanticus HTCC2559|Rep: Cytoplasmic
           membrane protein - Croceibacter atlanticus HTCC2559
          Length = 567

 Score = 35.9 bits (79), Expect = 0.28
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
 Frame = +2

Query: 83  KKKLSFVF-LYCVIVKMAYCM*SIEHFYFNIFFSLLKLISIM*LHIKCMTII*CLVFFCL 259
           KK  + +F LY + + + +    +  FYFN+ + LL L+    L+ K +T++ CL+  C+
Sbjct: 398 KKTATLIFVLYVLQLIVLFFTSPLYRFYFNLLYILLCLVVASVLY-KRLTVLKCLLTICI 456

Query: 260 LFHAIYFFEWTVLNTRMKNNY 322
           L   +     T +N    N++
Sbjct: 457 LISGLPLIINTPINFLANNSF 477


>UniRef50_Q54G20 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1026

 Score = 35.1 bits (77), Expect = 0.48
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +2

Query: 86  KKLSFVFLYCVIV-KMAYCM*SIEHFYFNIFFSLLKLISIM*LHIKCMTII*CLVFFCLL 262
           KKL F F Y   V K  Y +  +  FYF +F+ +  +I +   H K  TII  ++FF   
Sbjct: 246 KKLGFFFFYRDDVEKFLYFLKKL-FFYFILFYFIFFIIDLTKFHKKKNTII--VLFFSFF 302

Query: 263 FHAIYFFEWTVLNTRMKNN 319
           F   +  + T+L   +  N
Sbjct: 303 FFFFFIIQMTLLPNYLYKN 321


>UniRef50_Q5CT06 Cluster: Predicted secreted protein, signal peptide;
            n=3; Cryptosporidium|Rep: Predicted secreted protein,
            signal peptide - Cryptosporidium parvum Iowa II
          Length = 2995

 Score = 34.3 bits (75), Expect = 0.85
 Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = -3

Query: 181  RKKNIKI-KMLNRLHTIGHFHNYTIEEDKRKF 89
            RK NI+I +++  +H +G F +YTI+ D RKF
Sbjct: 1869 RKLNIQINEIMFNMHNLGTFRDYTIQRDDRKF 1900


>UniRef50_A1EWZ5 Cluster: Putative uncharacterized protein; n=2;
           Coxiella burnetii|Rep: Putative uncharacterized protein
           - Coxiella burnetii 'MSU Goat Q177'
          Length = 390

 Score = 32.3 bits (70), Expect = 3.4
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 134 YCM*SIEHFYFNIFFSLLKLISIM*LHIKCMTII*CLVFFC-LLFHAIY 277
           YC+  I    F IF S L     M LHI  +  +  ++FFC LL + +Y
Sbjct: 246 YCIIGINSLIFFIFVSYLLSDRAMYLHISFLVTLNAIMFFCALLIYKLY 294


>UniRef50_Q4GYH4 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 110

 Score = 32.3 bits (70), Expect = 3.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 92  LSFVFLYCVIVKMAYCM*SIEHFYFNIFFSLL 187
           L FV++YC+ + + Y +    HF+FN F S +
Sbjct: 63  LLFVYMYCINITLGYSLSVQLHFFFNYFSSYI 94


>UniRef50_Q4Z6X3 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 789

 Score = 31.9 bits (69), Expect = 4.5
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +2

Query: 158 FYFNIFFSLLKLISIM*LHIKCMTII*CLVFFCLLFHAIYFFEW-TVLNTRM 310
           FYFNI F  L + +I  + IKC+TI  C + F  L   I + +  + +NTR+
Sbjct: 163 FYFNIHFQPLLIKNICFIPIKCITIKRCNIIFKKLRKDIDYSDINSKINTRI 214


>UniRef50_UPI000049A4FB Cluster: hypothetical protein 25.t00017;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 25.t00017 - Entamoeba histolytica HM-1:IMSS
          Length = 983

 Score = 31.5 bits (68), Expect = 6.0
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 88  KTFVCLPLL-CNCENGLLYVI 147
           K F C+P L CNC+N LLY I
Sbjct: 485 KCFCCIPALQCNCDNTLLYAI 505


>UniRef50_Q4HKD1 Cluster: Sensor protein; n=2; Campylobacter|Rep:
           Sensor protein - Campylobacter lari RM2100
          Length = 429

 Score = 31.5 bits (68), Expect = 6.0
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 242 LVFFCLLFHAI-YFFEWTVLNTRMKNNY 322
           L FFC++F  + YFF  + +NT +KN Y
Sbjct: 12  LGFFCIVFFVLFYFFNESYINTTVKNTY 39


>UniRef50_Q4YMB3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 114

 Score = 31.1 bits (67), Expect = 7.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 161 YFNIFFSLLKLISIM*LHIKCMTI 232
           +FN FF LLK+ + + LH KC T+
Sbjct: 90  FFNSFFPLLKIRNFLYLHFKCYTL 113


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 305,208,057
Number of Sequences: 1657284
Number of extensions: 4852396
Number of successful extensions: 9824
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9811
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16080341554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)