Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0842
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    24   7.3  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    24   7.3  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    24   7.3  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    24   7.3  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    24   7.3  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   9.7  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 140 YNRPFSQLHNRGR-QTKVFFFISE 72
           Y+  +S +HNRGR  T V+F I +
Sbjct: 637 YDNYYSFVHNRGRFATYVYFIIKD 660


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 6/24 (25%), Positives = 19/24 (79%)
 Frame = -1

Query: 108 RKTNESFFFYKRVKHIALLVDYFE 37
           ++ ++S+F++ +++ I++ VDY +
Sbjct: 233 KRYSDSYFYFSKMRRISIDVDYVD 256


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 254 CLLFHAIYFFEWTVLNTRMKNNYRLLL 334
           C+ F  +YF + T L T  K+N++ ++
Sbjct: 810 CVPFLGVYFTDLTFLKTGNKDNFQNMI 836


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 157 MLNRLHTIGHFHNYTIEEDKRKFFFL 80
           ++NRL T GHF  YT   ++   F +
Sbjct: 674 LVNRLSTTGHFLAYTANLERDGVFVI 699


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 160 KMLNRLHTIGHFHNYTIEE 104
           K+ + LHT  H H +TI+E
Sbjct: 293 KVADFLHTFHHEHTFTIDE 311


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 155 AQSITYNRPFSQLHNRGR 102
           AQ++T NRP S L  +GR
Sbjct: 944 AQNLTSNRPNSTLFGKGR 961


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,413,834
Number of Sequences: 5004
Number of extensions: 24189
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)