Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0842
         (393 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55801| Best HMM Match : EPTP (HMM E-Value=0.24)                     27   7.2  
SB_5380| Best HMM Match : zf-CXXC (HMM E-Value=2.9)                    26   9.5  

>SB_55801| Best HMM Match : EPTP (HMM E-Value=0.24)
          Length = 426

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 93  SFFFYKRVKHIALLVDYF 40
           SFF YKR+ +IA   +YF
Sbjct: 400 SFFTYKRIHYIAFATNYF 417


>SB_5380| Best HMM Match : zf-CXXC (HMM E-Value=2.9)
          Length = 231

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +1

Query: 55  QCNMFDSLIKKKTFVCLPLLCN----CENGLLYVI 147
           QC++ + +  K T +C+ L C+    C+  LLY++
Sbjct: 28  QCSVCNEVPNKNTSICICLRCSKQNLCQTELLYLV 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,651,215
Number of Sequences: 59808
Number of extensions: 153302
Number of successful extensions: 216
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)