Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0842
         (393 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical p...    27   4.8  
AF039051-4|AAB94264.1|  539|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z46787-9|CAA86747.1|  274|Caenorhabditis elegans Hypothetical pr...    26   8.4  

>U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical
           protein C45G9.11 protein.
          Length = 354

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 158 FYFNIFFSLLKLISIM*LHIKCMTII*CLVFFCLLF 265
           F+ N FF +  + S++       T I CL+ FC L+
Sbjct: 288 FFINFFFLIFSIWSLVSPGSLTFTPINCLLIFCFLY 323


>AF039051-4|AAB94264.1|  539|Caenorhabditis elegans Hypothetical
           protein C14C6.6 protein.
          Length = 539

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 193 NFDNVITY*MYDYNIMFSFFLFTISCNLFF*VDSA*YKNEKQL*A-FIVLTNSKLVQ 360
           NF  V +Y    +N   S   F +   L      A YKNEKQ+ A FIV    KLVQ
Sbjct: 336 NFKTVTSYLDSIHNSSISNLHFRVKWVLKHNNTPATYKNEKQVIAIFIVKIYMKLVQ 392


>Z46787-9|CAA86747.1|  274|Caenorhabditis elegans Hypothetical
           protein C16C10.9 protein.
          Length = 274

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 242 LVFFCLLFHAIYFFEWT 292
           L+ FC+L H + F EWT
Sbjct: 220 LIKFCILMHQLGFQEWT 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,783,673
Number of Sequences: 27780
Number of extensions: 136235
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)