Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0842
         (393 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    25   0.41 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   2.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   2.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   8.8  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 24.6 bits (51), Expect = 0.41
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = -3

Query: 127 FHNYTIEEDKRKFFFL*ASQTYCTVSGLFRMHFNTVTMQCSC 2
           FH    E   +K F     +      G  +MH  T T+ C C
Sbjct: 4   FHCAAAEGQAKKSFSCKYCEKVYVSLGALKMHIRTHTLPCKC 45


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 146 SIEHFYFNIFFSLLKLISIM*LHIKCMTII*CLVFFCLLFH 268
           +I H  +N  F++   +      I C+ I+  +   CLLFH
Sbjct: 505 AINHIRWNSAFAIAPAV------ISCLGIVATMAVACLLFH 539


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 146 SIEHFYFNIFFSLLKLISIM*LHIKCMTII*CLVFFCLLFH 268
           +I H  +N  F++   +      I C+ I+  +   CLLFH
Sbjct: 595 AINHIRWNSAFAIAPAV------ISCLGIVATMAVACLLFH 629


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 73  SQTYCTVSGLFRMHFNTVTMQ 11
           ++TYC +  L   HFN V  Q
Sbjct: 537 AETYCNLFSLSVDHFNAVLDQ 557


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 73  SQTYCTVSGLFRMHFNTVTMQ 11
           ++TYC +  L   HFN V  Q
Sbjct: 505 AETYCNLFSLSVDHFNAVLDQ 525


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 58  CNMFDSLIKKKTFVCLP 108
           CN+ D++  K T  C P
Sbjct: 638 CNIMDAICTKLTADCQP 654


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,979
Number of Sequences: 438
Number of extensions: 1794
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)