Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0842
         (393 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18140.1 68418.m02130 DNAJ heat shock N-terminal domain-conta...    27   6.0  
At3g25490.1 68416.m03169 wall-associated kinase, putative simila...    27   6.0  
At1g05055.1 68414.m00506 basic transcription factor 2, 44kD subu...    26   7.9  

>At5g18140.1 68418.m02130 DNAJ heat shock N-terminal
           domain-containing protein similar to DnaJ protein Tid-1
           [Homo sapiens] GI:17066575; contains Pfam profile
           PF00226 DnaJ domain
          Length = 333

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -3

Query: 184 QRKKNIKIKMLNRLHTIGHFHNYTIE-EDKRKFFFL*ASQTYCTVSGLFRMHFNT 23
           Q  + +K++  +R H +   H+YT E ED  K+++  + +   +  G F  H++T
Sbjct: 136 QYDRALKLQENSRFHRVKR-HSYTPEVEDAMKYYYTWSEKRQRSRHGRFYGHYST 189


>At3g25490.1 68416.m03169 wall-associated kinase, putative similar
           to wall-associated kinase 4 GB:CAA08793 from
           [Arabidopsis thaliana]
          Length = 433

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -2

Query: 302 Y*ALSTQKNKLHEIVNKKKLN 240
           Y  L+T++N+LHEI++ + LN
Sbjct: 323 YFVLATKENRLHEIIDDQVLN 343


>At1g05055.1 68414.m00506 basic transcription factor 2, 44kD
           subunit-related contains weak similarity to
           Swiss-Prot:Q13888 TFIIH basal transcription factor
           complex p44 subunit (Basic transcription factor 2 44 kDa
           subunit, BTF2-p44, General transcription factor IIH
           polypeptide 2) [Homo sapiens]
          Length = 421

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 31  NAFEIIH*QCNMFDSLIKKKTFVCLPLLCNCENG 132
           NA E++H   N   S   ++  +    LC C+ G
Sbjct: 168 NALELVHEHLNQVPSYGHREVLILYSALCTCDPG 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,816,880
Number of Sequences: 28952
Number of extensions: 108543
Number of successful extensions: 206
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)