Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0841
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    60   4e-10
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     31   0.24 
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    26   5.1  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   8.9  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    25   8.9  

>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 26/61 (42%), Positives = 37/61 (60%)
 Frame = +2

Query: 5   PDEFYCLRLLEETGVCVIPGTGFGQLPGSFHFRTTILHPKDEFQYMMDSIRRFHLNFMQL 184
           PDEFY + LL+ +G+CV+PG+GFGQ  G +H R T L    E+   ++   + H   M L
Sbjct: 447 PDEFYAIELLKRSGICVVPGSGFGQPEGDYHIRITFLAKGTEY---IERFVKAHNEIMDL 503

Query: 185 Y 187
           Y
Sbjct: 504 Y 504


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 450 IDKY*SYRHITVLFLYGRHGCQLYEKSKSKNHKKCT*QIL 569
           I  + S  H+T+L+   R GC+LY  SKS  +   T +++
Sbjct: 12  IQTFVSSNHLTMLYGLKRFGCRLYHHSKSTRYIDATAKVV 51


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 555 CTFCDFYFLTFRIVDSHVYRIKKELLCVYSFN 460
           C     YF TF++  +H Y IK    C+ SFN
Sbjct: 182 CAHLTDYF-TFKLECTHKYNIKVYEACLQSFN 212


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 215 LNEFSIVDL*WCLRDSRDLLDFPVLALKVKVKWVNYNI 328
           LNE    DL + + DS+   D  +LA++   K +NY++
Sbjct: 211 LNEEEAEDLKYTISDSKVFNDLLLLAIQYVPKVLNYHV 248


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 49  VCDPGYGIRAASRII 93
           VCDP YG+RA ++ I
Sbjct: 316 VCDPPYGVRAGAKKI 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,886
Number of Sequences: 5004
Number of extensions: 61610
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)