Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0841
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33735| Best HMM Match : Aminotran_1_2 (HMM E-Value=0.13)            60   2e-09

>SB_33735| Best HMM Match : Aminotran_1_2 (HMM E-Value=0.13)
          Length = 383

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 26/61 (42%), Positives = 37/61 (60%)
 Frame = +2

Query: 5   PDEFYCLRLLEETGVCVIPGTGFGQLPGSFHFRTTILHPKDEFQYMMDSIRRFHLNFMQL 184
           PD  Y   LLE TG  V PG+  GQ  G++HFR TI+ P ++  +  +  +RFH +FM+ 
Sbjct: 321 PDSLYASELLEATGQFVAPGSVMGQKEGTYHFRITIIPPLEKTVHQYEQFKRFHEDFMKK 380

Query: 185 Y 187
           Y
Sbjct: 381 Y 381


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,433,016
Number of Sequences: 59808
Number of extensions: 429102
Number of successful extensions: 917
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)