Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0841
         (763 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           24   5.9  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    24   5.9  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   7.8  

>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +2

Query: 227 SIVDL*WCLRDSRDLLDFPVLALKVKVKWVNYNIEAVKPKSPMCKKSILNE*VKNFFYKI 406
           +I DL   L DS DLL      L  K++ +   ++ ++P+S  C+  +    +    Y++
Sbjct: 448 NIPDLPQGLMDSADLLPKYRSDLVGKIRALRQELQLLQPQSGHCRLEVSRNEIFEESYRL 507

Query: 407 L 409
           +
Sbjct: 508 I 508


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +1

Query: 31  VGGNWSVCDPGYGIRAASRIIPFQNYDTSP----QGRIPVHDGLYK 156
           V G++S  D  Y       I+P  N  +SP    QGRI   D  YK
Sbjct: 192 VCGDYSYSDHRYITYTVGTIVPVVNEPSSPRMRHQGRIRHADRRYK 237


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 35  EETGVCVIPGTGFGQLPGSFHFRTTILHPKDEFQYM 142
           E+T   +I     GQL   F    TI+H K   +Y+
Sbjct: 705 EKTEGVMISSLRRGQLKVPFRVGDTIIHSKQSIRYL 740


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 770,762
Number of Sequences: 2352
Number of extensions: 15350
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79002570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)