Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0841
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000195-5|AAC24265.2|  504|Caenorhabditis elegans Hypothetical ...    74   1e-13
Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr...    29   3.6  

>AF000195-5|AAC24265.2|  504|Caenorhabditis elegans Hypothetical
           protein C32F10.8a protein.
          Length = 504

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 30/61 (49%), Positives = 42/61 (68%)
 Frame = +2

Query: 5   PDEFYCLRLLEETGVCVIPGTGFGQLPGSFHFRTTILHPKDEFQYMMDSIRRFHLNFMQL 184
           PD FY ++LLE TG+C++PG+GFGQ  G++HFRTTIL   + F+ M+     FH  F+  
Sbjct: 443 PDFFYAMQLLETTGICIVPGSGFGQKDGTYHFRTTILPQPELFKDMLSRFTDFHQKFLAE 502

Query: 185 Y 187
           Y
Sbjct: 503 Y 503


>Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical
           protein T09F5.16 protein.
          Length = 311

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = +2

Query: 92  FHFRTTILHPKDEFQYMMDSIRRFHLNFMQLYP*KKYLDLALNEFSIV 235
           F   T ++H  +EF   + SI+RF L FM  Y  +KYL++++   ++V
Sbjct: 94  FPLVTGLMHDVNEFLLGLLSIQRFCLYFMPNY--EKYLNISVEALNVV 139


>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical protein
            C46A5.4 protein.
          Length = 1432

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 481  QFFFYTVDMAVNYTKSQKVKITKSAHSRFWFDNDD 585
            +F++ T D  V +T  Q V+I K++ SR   DN +
Sbjct: 1291 RFYYETSDSMVRFTPDQLVEIRKASLSRIICDNSE 1325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,904,551
Number of Sequences: 27780
Number of extensions: 340654
Number of successful extensions: 724
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)