Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0841
(763 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23310.1 68414.m02915 glutamate:glyoxylate aminotransferase 1... 79 3e-15
At1g70580.2 68414.m08128 glutamate:glyoxylate aminotransferase 2... 78 7e-15
At1g70580.1 68414.m08127 glutamate:glyoxylate aminotransferase 2... 78 7e-15
At1g72330.1 68414.m08367 alanine aminotransferase, putative simi... 76 3e-14
At1g17290.1 68414.m02107 alanine aminotransferase, putative simi... 75 7e-14
At2g27250.1 68415.m03274 CLAVATA3 CLAVATA3/ESR-Related (CLE) fam... 32 0.36
At5g36200.1 68418.m04364 F-box family protein contains Pfam PF00... 29 4.5
At5g19190.1 68418.m02285 expressed protein predicted protein, Ar... 29 4.5
At2g32170.1 68415.m03932 expressed protein ;supported by cDNA GI... 29 4.5
At1g72970.1 68414.m08439 glucose-methanol-choline (GMC) oxidored... 28 5.9
>At1g23310.1 68414.m02915 glutamate:glyoxylate aminotransferase 1
(GGT1) identical to glutamate:glyoxylate
aminotransferase 1 [Arabidopsis thaliana] GI:24461827;
similar to alanine aminotransferase GI:4730884 from
[Oryza sativa]; contains Pfam profile PF00155:
aminotransferase, classes I and II
Length = 481
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/61 (55%), Positives = 43/61 (70%)
Frame = +2
Query: 5 PDEFYCLRLLEETGVCVIPGTGFGQLPGSFHFRTTILHPKDEFQYMMDSIRRFHLNFMQL 184
PD FYCL+LLE TG+ +PG+GFGQ G FH RTTIL +DE +MDS ++F+ FM
Sbjct: 412 PDVFYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPAEDEMPEIMDSFKKFNDEFMTQ 471
Query: 185 Y 187
Y
Sbjct: 472 Y 472
>At1g70580.2 68414.m08128 glutamate:glyoxylate aminotransferase 2
(GGT2) identical to glutamate:glyoxylate
aminotransferase 2 [Arabidopsis thaliana] GI:24461829;
similar to alanine aminotransferase from Panicum
miliaceum [SP|P34106], GI:4730884 from Oryza sativa;
contains Pfam profile PF00155: aminotransferase, classes
I and II
Length = 481
Score = 77.8 bits (183), Expect = 7e-15
Identities = 33/61 (54%), Positives = 43/61 (70%)
Frame = +2
Query: 5 PDEFYCLRLLEETGVCVIPGTGFGQLPGSFHFRTTILHPKDEFQYMMDSIRRFHLNFMQL 184
PD FYCL+LLE TG+ +PG+GFGQ G FH RTTIL ++E +MDS ++F+ FM
Sbjct: 412 PDVFYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEEMPEIMDSFKKFNDEFMSQ 471
Query: 185 Y 187
Y
Sbjct: 472 Y 472
>At1g70580.1 68414.m08127 glutamate:glyoxylate aminotransferase 2
(GGT2) identical to glutamate:glyoxylate
aminotransferase 2 [Arabidopsis thaliana] GI:24461829;
similar to alanine aminotransferase from Panicum
miliaceum [SP|P34106], GI:4730884 from Oryza sativa;
contains Pfam profile PF00155: aminotransferase, classes
I and II
Length = 481
Score = 77.8 bits (183), Expect = 7e-15
Identities = 33/61 (54%), Positives = 43/61 (70%)
Frame = +2
Query: 5 PDEFYCLRLLEETGVCVIPGTGFGQLPGSFHFRTTILHPKDEFQYMMDSIRRFHLNFMQL 184
PD FYCL+LLE TG+ +PG+GFGQ G FH RTTIL ++E +MDS ++F+ FM
Sbjct: 412 PDVFYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEEMPEIMDSFKKFNDEFMSQ 471
Query: 185 Y 187
Y
Sbjct: 472 Y 472
>At1g72330.1 68414.m08367 alanine aminotransferase, putative similar
to alanine aminotransferase 2 SP|P34106 from Panicum
miliaceum, SP|P52894 from Hordeum vulgare, GI:4730884
from Oryza sativa
Length = 540
Score = 75.8 bits (178), Expect = 3e-14
Identities = 31/58 (53%), Positives = 43/58 (74%)
Frame = +2
Query: 5 PDEFYCLRLLEETGVCVIPGTGFGQLPGSFHFRTTILHPKDEFQYMMDSIRRFHLNFM 178
PD FYC RLL TGV V+PG+GFGQ+PG++HFR TIL +D+ +++ + FH +FM
Sbjct: 478 PDAFYCKRLLNATGVVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVNRLTEFHKSFM 535
>At1g17290.1 68414.m02107 alanine aminotransferase, putative similar
to alanine aminotransferase from Panicum miliaceum
[SP|P34106], GB:AAC62456 GI:3694807 from [Zea mays],
GI:4730884 from Oryza sativa
Length = 543
Score = 74.5 bits (175), Expect = 7e-14
Identities = 30/58 (51%), Positives = 43/58 (74%)
Frame = +2
Query: 5 PDEFYCLRLLEETGVCVIPGTGFGQLPGSFHFRTTILHPKDEFQYMMDSIRRFHLNFM 178
PD FYC RLL+ TG+ V+PG+GF Q+PG++HFR TIL +D+ ++D + FH +FM
Sbjct: 481 PDNFYCKRLLKATGIVVVPGSGFRQVPGTWHFRCTILPQEDKIPAIVDRLTAFHQSFM 538
>At2g27250.1 68415.m03274 CLAVATA3 CLAVATA3/ESR-Related (CLE) family
of proteins; ligand for CLV1; responsible for negative
regulation of meristem cell differention and replacement
Length = 94
Score = 32.3 bits (70), Expect = 0.36
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 245 WCLRDSRDLLDFPVLALKVKVKWVNYNIEAVKPKS 349
WC + S+ L ++ ++ +K++ +WV N EA K K+
Sbjct: 24 WCAKHSKMLFNWQMMMMKMESEWVGANGEAEKAKT 58
>At5g36200.1 68418.m04364 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain; similar to unknown protein
(pir||T00841)
Length = 471
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = -2
Query: 576 VKPKSAMCTFCDFYFLTFRIVDSHVYRIKKELLC---VYSFNIYL*LSFDIVLKNSPSYK 406
+KP+ A FCD Y + + ++ R K LL + F IY F+I NS S+
Sbjct: 144 IKPRKANYQFCDKYAIGYEKKKNNSLRTNKMLLFHKESFCFRIYW---FEIYNFNSASWN 200
Query: 405 IL*KKFFTHSFKIDF 361
+ +FT +++ +
Sbjct: 201 VF---YFTRDWELPY 212
>At5g19190.1 68418.m02285 expressed protein predicted protein,
Arabidopsis thaliana
Length = 154
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 279 KSSRSRESLKHHQRSTMLNSFNAKSKY 199
KSS+ R HHQ+ +SFNAK ++
Sbjct: 74 KSSQPRRRPHHHQKQGRYSSFNAKQQH 100
>At2g32170.1 68415.m03932 expressed protein ;supported by cDNA
GI:20259498
Length = 504
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 8 DEFYCLRLLEETG-VCVIPGTGFGQLPGSFHFRTTILHPKDEFQYMMDSIRRFHLNFMQL 184
D + RL E T C++PG G G+L + +EF Y M F LN+ Q+
Sbjct: 274 DSLFPDRLKESTPPACLVPGAGLGRLALEISC-LGFISQGNEFSYYMMICSSFILNYTQV 332
>At1g72970.1 68414.m08439 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 594
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 32 LEETGVCVIPGTGFGQLPGSFHFRTTILHPKDE 130
+ + GV V TGFGQ P S H I+ K+E
Sbjct: 357 ITKMGVYVEASTGFGQSPESIHTHYGIMSNKNE 389
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,870,568
Number of Sequences: 28952
Number of extensions: 312415
Number of successful extensions: 692
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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