Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0840
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    25   4.6  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    24   8.0  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    24   8.0  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    24   8.0  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    24   8.0  

>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 274 AGSRYEPQAELGXSHVLRSAAGLTTKNISSFLSQRKXSQIGAYVS 408
           AGSR E     G +H L   A   TKN S    + +    GA+++
Sbjct: 52  AGSRAETAKNNGAAHFLEHLAFKGTKNRSQKALELEFENTGAHLN 96


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 295 QAELGXSHVLRSAAGLTTKNISSFLSQRKXSQIGAYV 405
           Q +LG +  + +  G+TT N+  F+ + +     +YV
Sbjct: 886 QYDLGAAQFITAVNGVTTLNLEDFVREIRKIDDNSYV 922


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 97  GIQNSRRPLYSSCYDQGLRPXCAGSKERC 183
           G  ++   L + CY  G  P C G+   C
Sbjct: 794 GAYDTCAKLITGCYQTGFTPVCIGASLYC 822


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 271 KAGSRYEPQAELGXSHVLRSAAGLTTKNISSFLSQRKXSQIG 396
           KAGSRYE +   G SH +   A   T+       + K   +G
Sbjct: 74  KAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAKLENLG 115


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 40  VNHKPLLRYYLKFLKTYENGIQNS 111
           V +  LL YY++  K Y  G+ ++
Sbjct: 509 VKYSELLNYYIECCKNYNGGVMDN 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,251,296
Number of Sequences: 5004
Number of extensions: 18250
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)