Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0840
         (410 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)         34   0.052
SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     31   0.28 
SB_16340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)                 28   3.4  
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)
          Length = 593

 Score = 33.9 bits (74), Expect = 0.052
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = +1

Query: 268 FKAGSRYEPQAELGXSHVLRSAAGL 342
           F AGSRYE  + LG +H+LR+AA L
Sbjct: 57  FDAGSRYETDSNLGITHMLRNAAYL 81


>SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1296

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +1

Query: 28  REDSVNHKPLLRYYLKFLKTYENGIQNSRRPLYSSCYDQGLRPXCAGSKER 180
           R D VN +  L   L+  +  E GI   RR LYS C+D+ +R       ER
Sbjct: 135 RLDVVNLQEQLDMRLQQRQARETGICPVRRELYSQCFDELIRQVTINCAER 185


>SB_16340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 115 DESFGCHFRKFLETLGSIATKAYDLRSLLFLRKSLG 8
           DE F    RKF+E + S   +  D+  L+ + KSLG
Sbjct: 26  DERFLFQSRKFMEMINSAVDRLNDISLLVMILKSLG 61


>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
          Length = 2376

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 25  GREDSVNHKPLLRYYLKFLKTYENGIQNSRRPLYSSCYDQGL 150
           G+E  VN K LLR+ +      E G Q     L   CY   L
Sbjct: 239 GKEHIVNLKQLLRWAVNRQMKAEGGFQGRTNKLVDGCYSYWL 280


>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 148 APDRNMTNKGGDESFGCHFRKFLETLGSIATKA-YDLRSLLFLRKSLGNR 2
           A +R M  +GG + FG  F K++ET  +   K   DL  L F     G++
Sbjct: 533 AGERAMLVRGGGKDFGICFGKWIETSDATKKKTPLDLFRLRFFSLEEGHQ 582


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,372,574
Number of Sequences: 59808
Number of extensions: 136942
Number of successful extensions: 263
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)