Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0840
(410 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67734-5|CAD56227.1| 424|Caenorhabditis elegans Hypothetical pr... 35 0.020
Z67734-4|CAB54182.1| 410|Caenorhabditis elegans Hypothetical pr... 35 0.020
AL032678-2|CAC35829.2| 424|Caenorhabditis elegans Hypothetical ... 35 0.020
AL032678-1|CAB54320.1| 410|Caenorhabditis elegans Hypothetical ... 35 0.020
Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical pr... 33 0.081
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr... 30 0.75
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 29 1.7
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 29 1.7
AF100306-6|AAC68920.1| 427|Caenorhabditis elegans Hypothetical ... 27 4.0
U61947-8|AAB03133.1| 64|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical pr... 26 9.2
>Z67734-5|CAD56227.1| 424|Caenorhabditis elegans Hypothetical
protein VW06B3R.1b protein.
Length = 424
Score = 35.1 bits (77), Expect = 0.020
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 256 VTXAFKAGSRYEPQAELGXSHVLRSAAGLTTKN 354
+ AF+AGSRY+P + G +H++R++ G N
Sbjct: 62 IVLAFRAGSRYQPANKQGLTHLIRNSVGRDAPN 94
>Z67734-4|CAB54182.1| 410|Caenorhabditis elegans Hypothetical
protein VW06B3R.1a protein.
Length = 410
Score = 35.1 bits (77), Expect = 0.020
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 256 VTXAFKAGSRYEPQAELGXSHVLRSAAGLTTKN 354
+ AF+AGSRY+P + G +H++R++ G N
Sbjct: 48 IVLAFRAGSRYQPANKQGLTHLIRNSVGRDAPN 80
>AL032678-2|CAC35829.2| 424|Caenorhabditis elegans Hypothetical
protein VW06B3R.1b protein.
Length = 424
Score = 35.1 bits (77), Expect = 0.020
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 256 VTXAFKAGSRYEPQAELGXSHVLRSAAGLTTKN 354
+ AF+AGSRY+P + G +H++R++ G N
Sbjct: 62 IVLAFRAGSRYQPANKQGLTHLIRNSVGRDAPN 94
>AL032678-1|CAB54320.1| 410|Caenorhabditis elegans Hypothetical
protein VW06B3R.1a protein.
Length = 410
Score = 35.1 bits (77), Expect = 0.020
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 256 VTXAFKAGSRYEPQAELGXSHVLRSAAGLTTKN 354
+ AF+AGSRY+P + G +H++R++ G N
Sbjct: 48 IVLAFRAGSRYQPANKQGLTHLIRNSVGRDAPN 80
>Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical
protein T10B10.2 protein.
Length = 422
Score = 33.1 bits (72), Expect = 0.081
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 265 AFKAGSRYEPQAELGXSHVLRSAAGLTTK 351
AF+AGSRYE + G SH +R+ G T+
Sbjct: 48 AFRAGSRYEKANQAGLSHTIRNFVGRDTQ 76
>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical protein
R09E10.7 protein.
Length = 1717
Score = 29.9 bits (64), Expect = 0.75
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 43 NHKPLLRYYLKFLKTYENGIQNSRRPLYSSCYDQGLRPXCAGSKERC 183
NH Y+L+ TY+ Q +RP++ DQ P + RC
Sbjct: 1006 NHLSNAAYFLERCPTYQRRFQPGQRPVFPYRDDQAQEPVPESAPNRC 1052
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 66 LPKVSKNLRKWHPKLSSPPLFVMLRSGATPXLR-RQ*RKMLGSNQVFYL 209
LP + K L +W+ K ML ATP LR + +K+L N +F L
Sbjct: 113 LPPILKVLVEWYEKYDESLCLSMLSPIATPELRLKLHKKLLAVNYLFCL 161
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 66 LPKVSKNLRKWHPKLSSPPLFVMLRSGATPXLR-RQ*RKMLGSNQVFYL 209
LP + K L +W+ K ML ATP LR + +K+L N +F L
Sbjct: 113 LPPILKVLVEWYEKYDESLCLSMLSPIATPELRLKLHKKLLAVNYLFCL 161
>AF100306-6|AAC68920.1| 427|Caenorhabditis elegans Hypothetical
protein T24C4.1 protein.
Length = 427
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 265 AFKAGSRYEPQAELGXSHVLRSAAG 339
AF+AGSRYE + G H +R+ G
Sbjct: 47 AFRAGSRYEKVTQPGLVHHVRNFVG 71
>U61947-8|AAB03133.1| 64|Caenorhabditis elegans Hypothetical
protein C06G3.3 protein.
Length = 64
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 122 RGRREFWMPFS*VFRNFR*YRNKG 51
RG++E+W+PF+ F N +N G
Sbjct: 40 RGKKEWWLPFNIPFHNEIFRKNSG 63
>Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical
protein F25D1.4 protein.
Length = 882
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 133 MTNKGGDESFGCHFRKFLETLGSIATKAYDLRSLLFLR 20
+T DESF F F + L + KA +L+ F+R
Sbjct: 750 LTGIAADESFSDKFSNFSKCLDELHEKAPNLKKTRFIR 787
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,865,013
Number of Sequences: 27780
Number of extensions: 100866
Number of successful extensions: 228
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -