Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0840
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   4.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   4.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.2  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 63  ILPKVSKNLRKWHPKLSSPPLFVMLRSGATPXLRRQ 170
           +LPK++  + +W+P   + P+   +     P LR +
Sbjct: 519 VLPKLTLEVEEWNPLTDTVPIHTWIHPW-LPLLRNR 553


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 85  TYENGIQNSRRPLYSS 132
           TY NG+   +RP++S+
Sbjct: 300 TYSNGLPFPQRPIWSN 315


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 85  TYENGIQNSRRPLYSS 132
           TY NG+   +RP++S+
Sbjct: 300 TYSNGLPFPQRPIWSN 315


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 344 LPRILVVSLVNAXSLRLE 397
           +PR  +VS  +  SLRLE
Sbjct: 739 IPRASLVSTTSVKSLRLE 756


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,862
Number of Sequences: 438
Number of extensions: 1093
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)