Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0840
         (410 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49580.1 68418.m06136 DNAJ heat shock N-terminal domain-conta...    27   4.9  
At4g10380.1 68417.m01703 major intrinsic family protein / MIP fa...    26   8.6  
At1g69360.1 68414.m07960 expressed protein                             26   8.6  
At1g11740.1 68414.m01347 ankyrin repeat family protein contains ...    26   8.6  

>At5g49580.1 68418.m06136 DNAJ heat shock N-terminal
           domain-containing protein contains similarity to S-locus
           protein 5 GI:6069485 from [Brassica rapa]; contains Pfam
           profile PF00226 DnaJ domain
          Length = 695

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 172 YCRRSXGVAPDRNMTNKGGDESFGCHFRKFLETLGSIATKAYD 44
           Y +++  V PD+NM N+   E+F      +   L S+  K+YD
Sbjct: 430 YRKKAMLVHPDKNMGNERAAEAFKKLQNAYEVLLDSVKQKSYD 472


>At4g10380.1 68417.m01703 major intrinsic family protein / MIP
           family protein contains Pfam profile: MIP PF00230
          Length = 304

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 148 APDRNMTNKGGDESFGCHFRKFLETLGSIATKAYD 44
           +PD ++T K G E  G     F  T G I  + YD
Sbjct: 71  SPDVSLTRKLGAEFVGTFILIFTATAGPIVNQKYD 105


>At1g69360.1 68414.m07960 expressed protein
          Length = 896

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 10  LNFS*GREDSVNHKPLLRYYLKFLKTYENGIQNSR 114
           LN +  +E+    KPL+  YLKF  T   GI ++R
Sbjct: 739 LNLTQTKEEDYMPKPLIPEYLKFDGTGSMGITSNR 773


>At1g11740.1 68414.m01347 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 624

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -2

Query: 190 DPNIFLYCRRSXGVAPDRNMTNKGGDESFGCHFRKFLETLGSIATKAYDLRSLLFLRKS 14
           D +I  +C +S    P  ++T     E      +  +ET+G    KAYD+ ++ F  KS
Sbjct: 254 DSDIAGFCGQSSLYRPGMDVTKAKLVEITNWRRQAKIETVGEWKAKAYDVENVSFSFKS 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,541,210
Number of Sequences: 28952
Number of extensions: 95921
Number of successful extensions: 197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)