Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0839
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   3.1  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   5.4  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           25   5.4  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   7.2  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   7.2  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   9.5  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    25   9.5  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    25   9.5  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   9.5  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 97  VYFKIVNTQRNQYLTLSVKTTPTQNHMAYGVNSVEGFKA-QWTLQPAKYDN 246
           V+  +V+ +RN+ LTL    + T N +   +  +   ++ +  L+P KY +
Sbjct: 179 VWQSLVSAERNELLTLYATLSTTNNSLDSSIRKIIRMQSFRGPLEPFKYSS 229


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 434  YALDSSER*KQYLESLYTPSVLLGTSDHAATVSE-RHAVTPGVGWL 300
            Y LDS E+ +++LE +  PS +   S      ++ R     GV WL
Sbjct: 1324 YLLDSREKERKFLEQMLNPSKVEAFSIPVPISADLRKYQQEGVNWL 1369


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 323 PHGVRIQWPRGRKSRAVRLGYKGFLSTAFIVHWNPEHIYNNEQI 454
           PH  R+QWP+ +    V +   G + ++F  +      YN E +
Sbjct: 20  PHSTRLQWPKSQDK--VFVAMSGGVDSSFSAYLLKSQGYNVEGV 61


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 21/68 (30%), Positives = 25/68 (36%)
 Frame = +1

Query: 145 SVKTTPTQNHMAYGVNSVEGFKAQWTLQPAKYDNDVFSSCTTANTTRRWCSLSQPTPGVT 324
           SV     +N     V + E     W LQ   Y NDVF              + Q TP V+
Sbjct: 238 SVNVCKEENFAILEVATPEDATFLWGLQSESYSNDVFLKFQRIQN----YIVPQITPEVS 293

Query: 325 AWRSDTVA 348
             RSD  A
Sbjct: 294 QKRSDDYA 301


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 273 EYNEALVLSKPTDTWGNRMAFGYSGRVVGSPEQYA 377
           +Y E    S PTDT+G+R     S  V G    Y+
Sbjct: 169 DYGEDYSQSYPTDTYGSRQKATPSDTVGGGAYDYS 203


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 24  LRRWQGQDESKSQLEVRSSV 83
           L + QGQDE+KS  E  SSV
Sbjct: 754 LEQEQGQDEAKSPAEQSSSV 773


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 223 LQPAKYDNDVFSSCTTANTTRRWCSLS-QPTPGVTA 327
           L P  YD+DVFS   +  +  ++   S  PTP V +
Sbjct: 259 LPPFNYDHDVFSFAPSVASADQFTESSMSPTPEVVS 294


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 241 DNDVFSSCTTANTTRRWCSLSQPTPGVTAWRSDTVAAWSEV 363
           DN +      A T RR+  +    PG   + +D VAA  E+
Sbjct: 70  DNHIAGLGQMAETVRRFSKVWGGKPGYEGYLNDRVAALPEI 110


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 28  GDGKDKTSPKVSWKFVPLWENNKVYFKIV 114
           G G D    K SW+  PLW   K+Y K++
Sbjct: 300 GYGFDARKRK-SWETYPLWVQVKLYEKVL 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,718
Number of Sequences: 5004
Number of extensions: 44090
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)