Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0839
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0321 + 20235221-20235628,20235874-20236839,20238313-20238405 29 2.3
02_02_0535 - 11292509-11294679,11294971-11295040,11295268-112953... 29 2.3
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799... 28 4.1
01_06_1408 - 37088014-37088448,37088892-37089167,37090777-37092297 28 4.1
08_02_1497 - 27548328-27548534,27548876-27548978,27549074-275491... 28 5.4
02_01_0035 - 220036-221419,222050-222801 28 5.4
09_02_0456 - 9525067-9525422,9525679-9528226 27 7.2
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 27 7.2
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 27 7.2
02_01_0097 + 712586-713035,714120-715080,715577-715746 27 7.2
01_06_0572 - 30337572-30338107,30338209-30338422,30338505-303388... 27 7.2
01_01_1108 + 8758486-8758815,8758913-8758960,8761512-8761664,876... 27 7.2
09_06_0106 - 20898480-20898680,20898762-20898864,20898953-208990... 27 9.5
03_02_0213 + 6480521-6480644,6482347-6482499,6482582-6482980,648... 27 9.5
02_02_0042 - 6297211-6297981 27 9.5
01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452... 27 9.5
>05_04_0321 + 20235221-20235628,20235874-20236839,20238313-20238405
Length = 488
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 73 VPLWENNKVYFKIVNTQRNQYLTL---SVKTTPTQNHMAYGVNSVEGFKAQW 219
VPL+ V F I N R ++L ++KT+ +NH+ V VE + A+W
Sbjct: 92 VPLFGKG-VGFDIDNATRTEHLRFFIDAIKTSKLRNHVNSMVQEVEDYFAKW 142
>02_02_0535 -
11292509-11294679,11294971-11295040,11295268-11295324,
11298629-11298789,11299123-11299156
Length = 830
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 121 QRNQYLTLSVKTTPTQNHMAYGVNS 195
QR Q L+ S +T P NH ++G N+
Sbjct: 790 QRKQLLSFSQRTVPVNNHSSHGSNN 814
>04_04_1020 +
30179214-30179285,30179597-30179671,30179839-30179947,
30180425-30180642,30180729-30181309,30181387-30182185
Length = 617
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 55 KVSWKFVPLWENNKVYFKIVNTQRNQYLTLSVKTTPTQNHMAYGVNSV 198
K+ + +P+W + VYF I NTQ T + T T +A G SV
Sbjct: 383 KILLRLIPIWLTSAVYF-IANTQAQ--TTFVQQGTKTDGRIARGAFSV 427
>01_06_1408 - 37088014-37088448,37088892-37089167,37090777-37092297
Length = 743
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 241 DNDVFSSCTTANTTRRWCSLSQP-TP 315
D+D + TTRRW SL+QP TP
Sbjct: 603 DSDTIGAYVCNPTTRRWASLTQPATP 628
>08_02_1497 -
27548328-27548534,27548876-27548978,27549074-27549153,
27549245-27549327,27549899-27549947,27550028-27550093,
27550254-27550303,27550762-27550886,27551842-27551954
Length = 291
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 202 GFKAQWTLQPAKYDNDVF 255
GF+ WT +P K+DN F
Sbjct: 171 GFEGAWTQEPLKFDNSYF 188
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 155 QPRPKTTWPTGSTASKVLRPNGPCSPLSTTTTFFLHVQPRI 277
QP+P+T P+G+ A++ R LS + +FF + R+
Sbjct: 377 QPQPQTQQPSGADAARRKRKRRRQEQLSASASFFERLVQRL 417
>09_02_0456 - 9525067-9525422,9525679-9528226
Length = 967
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 295 SLSQPTPGVTAWRSDTVAAWSEV 363
+L+ PT ++AWR D + W V
Sbjct: 44 ALTDPTAALSAWRGDDLCRWPHV 66
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 158 PRPKTTWPTGSTASKVLRPNGPCSPLST 241
PRP TWP + NG PL+T
Sbjct: 937 PRPVLTWPGSEQGGEAPESNGGLRPLTT 964
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 158 PRPKTTWPTGSTASKVLRPNGPCSPLST 241
PRP TWP + NG PL+T
Sbjct: 785 PRPVLTWPGSEQGGEAPESNGGLRPLTT 812
>02_01_0097 + 712586-713035,714120-715080,715577-715746
Length = 526
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 73 VPLWENNKVYFKIVNTQRNQ--YLTLSVKTTPTQNHMAYGVNSVEGFKAQW 219
VP++ +Y + T+ Q + T S+K + H+ V+ VEG+ AQW
Sbjct: 106 VPVFGRGVLYDVDLATRSRQISFCTDSIKPINLRGHVDSMVHEVEGYFAQW 156
>01_06_0572 -
30337572-30338107,30338209-30338422,30338505-30338862,
30338948-30339048,30339185-30339749,30340553-30340664,
30341196-30341372,30341589-30341686,30341859-30341953,
30342078-30342158
Length = 778
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 223 LQPAKYDNDVFSSCTTANTTRRWCSLSQPT---PGVTAWRSDTVAAWSEVPSST 375
L P++ DV S A + R ++++P P VTA + +AAWSE S T
Sbjct: 497 LDPSRTVVDVKPSPVMAQFSSRGPNVNEPNILKPDVTAPGLNILAAWSEASSPT 550
>01_01_1108 +
8758486-8758815,8758913-8758960,8761512-8761664,
8761749-8761847,8761884-8761991,8762078-8762200,
8763030-8763287
Length = 372
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 82 WENNKVYFKIVNTQRNQYLTLSVKTTPTQNHMAYGVNSVEGFKAQWTLQPAKYDNDVFS 258
+E+ YF + R +YL +S KT+ T++ + V V F + + D FS
Sbjct: 44 FEHKLFYFDLKENPRGRYLKISEKTSSTRSTIIVPVAGVAWFLDLFDYYIRTDERDAFS 102
>09_06_0106 -
20898480-20898680,20898762-20898864,20898953-20899047,
20899113-20899135,20899725-20899799,20900219-20900267,
20900349-20900414,20901257-20901306,20901688-20901812,
20903488-20903600
Length = 299
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 202 GFKAQWTLQPAKYDNDVF 255
GF WT +P K+DN F
Sbjct: 181 GFDGAWTKEPLKFDNSYF 198
>03_02_0213 +
6480521-6480644,6482347-6482499,6482582-6482980,
6483158-6483234,6483990-6485312
Length = 691
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 151 KTTPTQNHMAYGVNSVEGFKAQWTLQPAKYDND 249
+T PT N Y ++ +G + W Q K D D
Sbjct: 153 RTRPTNNDNEYASSANDGAEGSWKSQKKKRDKD 185
>02_02_0042 - 6297211-6297981
Length = 256
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 373 YCSGLPTTRPLYPNAMRLPQVSVGLE 296
YC LPT R P++ RLP V L+
Sbjct: 206 YCHELPTLRAYDPSSSRLPAVQQTLQ 231
>01_06_1613 +
38643833-38643974,38644054-38644190,38644828-38645207,
38645487-38645583,38645685-38645972,38646683-38647648
Length = 669
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 3 QQRWQTCLRRWQGQDESKSQLEVRSSVGEQQGLLQDCEHS 122
Q + Q L +GQ+E+ + L++ S + + G + DC +S
Sbjct: 100 QNKLQEALDLLKGQEETSAILQLESQIYYRLGRMNDCMNS 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,067,075
Number of Sequences: 37544
Number of extensions: 298598
Number of successful extensions: 899
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -