Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0839
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.0  
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_24859| Best HMM Match : HAP (HMM E-Value=6.4)                       29   1.8  
SB_23918| Best HMM Match : rve (HMM E-Value=0.013)                     29   1.8  
SB_40219| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)                   29   3.2  
SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)                   28   4.2  
SB_47290| Best HMM Match : Ank (HMM E-Value=5.4e-29)                   28   4.2  
SB_25515| Best HMM Match : Complex1_LYR (HMM E-Value=9.6)              28   4.2  
SB_43126| Best HMM Match : Myosin_head (HMM E-Value=4.1e-32)           28   5.6  
SB_42680| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   7.3  
SB_45912| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)                    27   9.7  
SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)                27   9.7  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.7  

>SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 229 PAKYDNDVFSSCTTANTTRRWCS 297
           P KY+N  + SCTT +  R WC+
Sbjct: 599 PFKYNNKQYHSCTTFDHYRLWCA 621


>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2644

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 229 PAKYDNDVFSSCTTANTTRRWCS 297
           P  Y    +SSC T+N   RWCS
Sbjct: 377 PFTYSGTKYSSCITSNHNYRWCS 399


>SB_24859| Best HMM Match : HAP (HMM E-Value=6.4)
          Length = 257

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 458 YLFVHCCIYALDSSER*KQYLESLYTPSVLLGTSDHAA 345
           Y F+H CIYAL  +E  ++Y E  Y  ++   T+D  A
Sbjct: 44  YAFMHLCIYALIRAEEVRKY-EERYETALASRTTDALA 80


>SB_23918| Best HMM Match : rve (HMM E-Value=0.013)
          Length = 1785

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 458  YLFVHCCIYALDSSER*KQYLESLYTPSVLLGTSDHAA 345
            Y F+H CIYAL  +E  ++Y E  Y  ++   T+D  A
Sbjct: 1020 YAFMHLCIYALIRAEEVRKY-EERYETALASRTTDALA 1056


>SB_40219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 164 PKTTWPTGSTASKVLRPNGP 223
           P T+WP+    + +LRPN P
Sbjct: 18  PNTSWPSHGAQTDILRPNNP 37


>SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)
          Length = 1206

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = +1

Query: 208 KAQWTLQPAKYDNDVFSSCTTANTTRRWCSLSQPTPGVTAWRSDTVAAWSEVPSSTLGV 384
           + Q  + P +Y    +S CTT   T  WCSL++       W    V A  + P     +
Sbjct: 258 QGQCCVFPFQYGGISYSQCTTDYHTGPWCSLTKNYDRDYLWGDCLVLADDDDPDDCASI 316


>SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)
          Length = 671

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +1

Query: 1   GNNDGRLAYGDGKDKTSPKVSWKFVPLWENNKVYFKIVNTQRNQY 135
           GN   R    D      P  S  + P W +N  +   +N+  N+Y
Sbjct: 204 GNTTWRSGKSDNCQNNRPTSSRSYFPKWRSNNEFQDFLNSNANRY 248


>SB_47290| Best HMM Match : Ank (HMM E-Value=5.4e-29)
          Length = 445

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 296 EHQRLVVFAVVHEEKTSLSYLAGCKVHWALKPSTLL 189
           +H R +  AV  E   SL   A   VHWA KP + L
Sbjct: 350 DHWRHIQIAVPFEVWMSLEKAAHASVHWAPKPRSQL 385


>SB_25515| Best HMM Match : Complex1_LYR (HMM E-Value=9.6)
          Length = 304

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
 Frame = +1

Query: 190 NSVEGFKAQWTLQPAKYDNDVF---SSCTTANTTRRWCSLSQPTPGVTAWR----SDTVA 348
           +SV  +K    L    + +DV     S  T ++ R  C L+ P P +  ++    S T+ 
Sbjct: 216 DSVMFYKIHHGLVKIDFPSDVIRKPGSYATRSSVRNTCQLTLPPPSINQFKYSFFSRTIP 275

Query: 349 AWSEVPSSTL 378
            W+ +P   L
Sbjct: 276 VWNSLPQQML 285


>SB_43126| Best HMM Match : Myosin_head (HMM E-Value=4.1e-32)
          Length = 898

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +1

Query: 157 TPTQNHMAYGVNSVEGF--KAQWTLQPAKYDNDVFSSCTTANTTRRWCSLSQPTPGVTAW 330
           +PTQ   +Y V + EG   + +  L P   ++    +    +T   W S  QP P ++A 
Sbjct: 486 SPTQYPRSYMVKTDEGILCRNRSALVPTTEEHTAEPTEQADDTDEEWPSPQQPLPTISAN 545

Query: 331 RSDTVAAWSEVPSST 375
           +  +  A + V  +T
Sbjct: 546 QESSTPANTRVSQTT 560


>SB_42680| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 700

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 138 QILITLSVHNLEVDLVVLPQRNELPADFWTRLVLAIAVGKSAIVVA 1
           Q+ ITLS H+ +V +  L   +         +V+ + VG +A+ VA
Sbjct: 62  QVSITLSAHSSQVSITTLAHTSTAVVVAIVVVVVIVVVGGAAVAVA 107


>SB_45912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 304 QPTPGVTAWRSDTVAAWSEVP 366
           Q  PG+ AWR+  + AW + P
Sbjct: 33  QSHPGLAAWRNQQLLAWQQHP 53


>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
          Length = 1086

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 304 QPTPGVTAWRSDTVAAWSEVP 366
           Q  PG+ AWR+  + AW + P
Sbjct: 933 QSHPGLAAWRNQQLLAWQQHP 953


>SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
          Length = 355

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 3   QQRWQTCLRRWQGQDESKSQLEVRSSVGEQQ 95
           QQ+WQ   R+WQ Q   +SQLE +    E Q
Sbjct: 302 QQQWQQQQRQWQ-QQLQQSQLEQQQRQQEMQ 331


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 229 PAKYDNDVFSSCTTANTTRRWCSLS 303
           P  Y    F+SCT A   R WC+++
Sbjct: 773 PFVYRGKRFNSCTRARHNRPWCAIT 797


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,180,498
Number of Sequences: 59808
Number of extensions: 339868
Number of successful extensions: 851
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)