Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0839
(538 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC057819-1|AAH57819.1| 156|Homo sapiens chromosome 1 open readi... 31 3.4
AL929472-10|CAH70085.1| 156|Homo sapiens chromosome 1 open read... 31 3.4
AK127381-1|BAC86950.1| 156|Homo sapiens protein ( Homo sapiens ... 31 3.4
BC042912-1|AAH42912.1| 518|Homo sapiens seryl-tRNA synthetase 2... 30 6.0
BC004408-1|AAH04408.2| 317|Homo sapiens high-mobility group 20B... 30 6.0
BC003505-1|AAH03505.2| 317|Homo sapiens high-mobility group 20B... 30 6.0
BC002552-1|AAH02552.1| 317|Homo sapiens HMG20B protein protein. 30 6.0
AL355709-1|CAB90809.2| 317|Homo sapiens HMG20B protein. 30 6.0
AK090733-1|BAC03510.1| 293|Homo sapiens protein ( Homo sapiens ... 30 6.0
AK000457-1|BAA91176.1| 518|Homo sapiens protein ( Homo sapiens ... 30 6.0
AF331191-1|AAG60060.1| 317|Homo sapiens structural DNA-binding ... 30 6.0
AF288679-1|AAG01174.1| 317|Homo sapiens smarce1-related protein... 30 6.0
AF146223-1|AAF66707.1| 317|Homo sapiens HMG domain protein HMGX... 30 6.0
AB029948-1|BAA99557.1| 518|Homo sapiens mitochondrial seryl-tRN... 30 6.0
BC036468-1|AAH36468.1| 593|Homo sapiens kelch-like 2, Mayven (D... 29 7.9
BC022503-1|AAH22503.1| 593|Homo sapiens kelch-like 2, Mayven (D... 29 7.9
AF059569-1|AAC67502.1| 593|Homo sapiens actin binding protein M... 29 7.9
AB209727-1|BAD92964.1| 460|Homo sapiens Kelch-like protein 2 va... 29 7.9
>BC057819-1|AAH57819.1| 156|Homo sapiens chromosome 1 open reading
frame 122 protein.
Length = 156
Score = 30.7 bits (66), Expect = 3.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 307 PTPGVTAWRSDTVAAWSEVPSSTLGV*RLSKYCFHRS 417
P PG WR WS P+ L RLSK C+ S
Sbjct: 69 PAPGAGWWRERLSQTWSAPPAGCLRERRLSKGCWRWS 105
>AL929472-10|CAH70085.1| 156|Homo sapiens chromosome 1 open reading
frame 122 protein.
Length = 156
Score = 30.7 bits (66), Expect = 3.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 307 PTPGVTAWRSDTVAAWSEVPSSTLGV*RLSKYCFHRS 417
P PG WR WS P+ L RLSK C+ S
Sbjct: 69 PAPGAGWWRERLSQTWSAPPAGCLRQRRLSKGCWRWS 105
>AK127381-1|BAC86950.1| 156|Homo sapiens protein ( Homo sapiens
cDNA FLJ45459 fis, clone BRSTN2010416. ).
Length = 156
Score = 30.7 bits (66), Expect = 3.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 307 PTPGVTAWRSDTVAAWSEVPSSTLGV*RLSKYCFHRS 417
P PG WR WS P+ L RLSK C+ S
Sbjct: 69 PAPGAGWWRERLSQTWSAPPAGCLRQRRLSKGCWRWS 105
>BC042912-1|AAH42912.1| 518|Homo sapiens seryl-tRNA synthetase 2,
mitochondrial protein.
Length = 518
Score = 29.9 bits (64), Expect = 6.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 411 MKAVLRKPLYPKRTARDFRPRGHCI 337
M A + + L+P T R FRPRG CI
Sbjct: 1 MAASMARRLWPLLTRRGFRPRGGCI 25
>BC004408-1|AAH04408.2| 317|Homo sapiens high-mobility group 20B
protein.
Length = 317
Score = 29.9 bits (64), Expect = 6.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 152 KQPRPKTTWPTGSTASKVLRPNGPCSPLSTTTTF 253
++P K WP G K+L PNGP +P++ F
Sbjct: 48 EEPVKKRGWPKGKKRKKIL-PNGPKAPVTGYVRF 80
>BC003505-1|AAH03505.2| 317|Homo sapiens high-mobility group 20B
protein.
Length = 317
Score = 29.9 bits (64), Expect = 6.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 152 KQPRPKTTWPTGSTASKVLRPNGPCSPLSTTTTF 253
++P K WP G K+L PNGP +P++ F
Sbjct: 48 EEPVKKRGWPKGKKRKKIL-PNGPKAPVTGYVRF 80
>BC002552-1|AAH02552.1| 317|Homo sapiens HMG20B protein protein.
Length = 317
Score = 29.9 bits (64), Expect = 6.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 152 KQPRPKTTWPTGSTASKVLRPNGPCSPLSTTTTF 253
++P K WP G K+L PNGP +P++ F
Sbjct: 48 EEPVKKRGWPKGKKRKKIL-PNGPKAPVTGYVRF 80
>AL355709-1|CAB90809.2| 317|Homo sapiens HMG20B protein.
Length = 317
Score = 29.9 bits (64), Expect = 6.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 152 KQPRPKTTWPTGSTASKVLRPNGPCSPLSTTTTF 253
++P K WP G K+L PNGP +P++ F
Sbjct: 48 EEPVKKRGWPKGKKRKKIL-PNGPKAPVTGYVRF 80
>AK090733-1|BAC03510.1| 293|Homo sapiens protein ( Homo sapiens
cDNA FLJ33414 fis, clone BRACE2019618, highly similar to
Homo sapiens HMG domain protein HMGX2 (HMGX2) mRNA. ).
Length = 293
Score = 29.9 bits (64), Expect = 6.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 152 KQPRPKTTWPTGSTASKVLRPNGPCSPLSTTTTF 253
++P K WP G K+L PNGP +P++ F
Sbjct: 48 EEPVKKRGWPKGKKRKKIL-PNGPKAPVTGYVRF 80
>AK000457-1|BAA91176.1| 518|Homo sapiens protein ( Homo sapiens
cDNA FLJ20450 fis, clone KAT05607. ).
Length = 518
Score = 29.9 bits (64), Expect = 6.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 411 MKAVLRKPLYPKRTARDFRPRGHCI 337
M A + + L+P T R FRPRG CI
Sbjct: 1 MAASMARRLWPLLTRRGFRPRGGCI 25
>AF331191-1|AAG60060.1| 317|Homo sapiens structural DNA-binding
protein BRAF35 protein.
Length = 317
Score = 29.9 bits (64), Expect = 6.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 152 KQPRPKTTWPTGSTASKVLRPNGPCSPLSTTTTF 253
++P K WP G K+L PNGP +P++ F
Sbjct: 48 EEPVKKRGWPKGKKRKKIL-PNGPKAPVTGYVRF 80
>AF288679-1|AAG01174.1| 317|Homo sapiens smarce1-related protein
protein.
Length = 317
Score = 29.9 bits (64), Expect = 6.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 152 KQPRPKTTWPTGSTASKVLRPNGPCSPLSTTTTF 253
++P K WP G K+L PNGP +P++ F
Sbjct: 48 EEPVKKRGWPKGKKRKKIL-PNGPKAPVTGYVRF 80
>AF146223-1|AAF66707.1| 317|Homo sapiens HMG domain protein HMGX2
protein.
Length = 317
Score = 29.9 bits (64), Expect = 6.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 152 KQPRPKTTWPTGSTASKVLRPNGPCSPLSTTTTF 253
++P K WP G K+L PNGP +P++ F
Sbjct: 48 EEPVKKRGWPKGKKRKKIL-PNGPKAPVTGYVRF 80
>AB029948-1|BAA99557.1| 518|Homo sapiens mitochondrial seryl-tRNA
synthetase protein.
Length = 518
Score = 29.9 bits (64), Expect = 6.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 411 MKAVLRKPLYPKRTARDFRPRGHCI 337
M A + + L+P T R FRPRG CI
Sbjct: 1 MAASMARRLWPLLTRRGFRPRGGCI 25
>BC036468-1|AAH36468.1| 593|Homo sapiens kelch-like 2, Mayven
(Drosophila) protein.
Length = 593
Score = 29.5 bits (63), Expect = 7.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 291 PTPRCIRGCT*RKNVVVVLSGLQGPLGLKTFDAVDPV 181
P+ RC G +V + G G L ++T D+ DPV
Sbjct: 340 PSGRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPV 376
>BC022503-1|AAH22503.1| 593|Homo sapiens kelch-like 2, Mayven
(Drosophila) protein.
Length = 593
Score = 29.5 bits (63), Expect = 7.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 291 PTPRCIRGCT*RKNVVVVLSGLQGPLGLKTFDAVDPV 181
P+ RC G +V + G G L ++T D+ DPV
Sbjct: 340 PSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPV 376
>AF059569-1|AAC67502.1| 593|Homo sapiens actin binding protein
MAYVEN protein.
Length = 593
Score = 29.5 bits (63), Expect = 7.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 291 PTPRCIRGCT*RKNVVVVLSGLQGPLGLKTFDAVDPV 181
P+ RC G +V + G G L ++T D+ DPV
Sbjct: 340 PSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPV 376
>AB209727-1|BAD92964.1| 460|Homo sapiens Kelch-like protein 2
variant protein.
Length = 460
Score = 29.5 bits (63), Expect = 7.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 291 PTPRCIRGCT*RKNVVVVLSGLQGPLGLKTFDAVDPV 181
P+ RC G +V + G G L ++T D+ DPV
Sbjct: 207 PSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPV 243
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,064,944
Number of Sequences: 237096
Number of extensions: 1652179
Number of successful extensions: 3952
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3951
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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