Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0839
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70205-4|CAA94115.2|  528|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacti...    30   1.2  
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation...    27   8.6  
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini...    27   8.6  

>Z70205-4|CAA94115.2|  528|Caenorhabditis elegans Hypothetical
           protein C11H1.5 protein.
          Length = 528

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 381 PKRTARDFRPRGHCIRTPCGYPRC 310
           PK   R +RPRG  +  P  YPRC
Sbjct: 465 PKFVKRWYRPRGSSVCVPYHYPRC 488


>AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacting
           protein (scaffoldprotein) protein 1 protein.
          Length = 998

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +1

Query: 226 QPAKYDNDVFSSCTTA---NTTRRWCSLSQP--TPGVTAWRSDTV 345
           Q  KYD+   SSCTT+   N T R  S   P  TP    W+S+T+
Sbjct: 751 QQRKYDSSGVSSCTTSDSQNPTHRVQSAFHPRDTPTSFYWKSETL 795


>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
           germline protein5 protein.
          Length = 1200

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 99  DLVVLPQRNELPADFWTRLVLAIAVGKSAIVVA 1
           +L++LP    LP++  TR+      GK  +V+A
Sbjct: 781 ELIILPVYGALPSEMQTRIFDPAPAGKRKVVIA 813


>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
           protein Y53C10A.9 protein.
          Length = 1564

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 178 AYGVNSVEGFKAQWTLQPAKYDNDVFSSCTTANTTRR 288
           +YGV +V   +  W   P ++DN   S     N  R+
Sbjct: 80  SYGVQTVNNVENYWNYSPMRWDNTTNSLDLAKNPARK 116


>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
           protein MOG-5 protein.
          Length = 1200

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 99  DLVVLPQRNELPADFWTRLVLAIAVGKSAIVVA 1
           +L++LP    LP++  TR+      GK  +V+A
Sbjct: 781 ELIILPVYGALPSEMQTRIFDPAPAGKRKVVIA 813


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,790,725
Number of Sequences: 27780
Number of extensions: 248871
Number of successful extensions: 691
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)