Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0839
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33070.1 68415.m04055 jacalin lectin family protein similar t...    32   0.21 
At5g18530.1 68418.m02191 beige/BEACH domain-containing protein c...    29   1.5  
At2g02580.1 68415.m00198 cytochrome P450 family protein                29   2.6  
At5g63450.1 68418.m07965 cytochrome P450, putative                     28   3.4  
At5g22720.1 68418.m02654 F-box family protein contains F-box dom...    27   7.9  
At4g35000.1 68417.m04963 L-ascorbate peroxidase 3 (APX3) identic...    27   7.9  
At1g03380.1 68414.m00317 expressed protein                             27   7.9  

>At2g33070.1 68415.m04055 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767, epithiospecifier [Arabidopsis
           thaliana] GI:16118845; contains Pfam profiles PF01419
           jacalin-like lectin family, PF01344 Kelch motif
          Length = 471

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 297 RAPTPRCIRGCT*RKNVVVVLSGLQGPLGLKTFDAVDPVGH 175
           + PTPR     T  +N V V  G+   + LKT DA + V H
Sbjct: 265 QGPTPRSFHSMTADENNVYVFGGVSATVRLKTLDAYNIVDH 305


>At5g18530.1 68418.m02191 beige/BEACH domain-containing protein
           contains 5 WD-40 repeats (PF00400); contains
           Beige/BEACH domain (Pfam PF02138);  FACTOR ASSOCIATED
           WITH N-SMASE ACTIVATION (FAN) (SP:Q92636) Homo
           sapiens;similar to Lipopolysaccharide-responsive and
           beige-like anchor protein (CDC4-like protein)
           (Beige-like protein) (SP:P50851) [Homo sapiens}
          Length = 909

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/39 (28%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = -3

Query: 269 VVHEEKTSLSYLAGCKV-HWALKPSTLLTP*AMWFWVGV 156
           ++++  ++L++L G KV H  ++PS +L   ++W W+ +
Sbjct: 264 IIYQLLSALAHLHGLKVSHGDIRPSNILLSDSLWSWLTI 302


>At2g02580.1 68415.m00198 cytochrome P450 family protein 
          Length = 500

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +1

Query: 58  VSWKFVPLWENNKVYFKIVNTQRNQYLTLSVKTTPTQNHMAYGVNSVEGFKAQWTLQP 231
           ++W    L  N +V  K+ +  RNQ +  SV T    +H+ Y +  V   K  W L P
Sbjct: 310 MTWAMAELIRNPRVMKKVQSEIRNQMINKSVITLDDIDHLPY-LKMV--IKETWRLHP 364


>At5g63450.1 68418.m07965 cytochrome P450, putative
          Length = 510

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 34  GKDKTSPKVSWKFVPLWENNKVYFKIVNTQRNQ 132
           G+D TS  ++W F  L +N+ V  KI++  RN+
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRNK 338


>At5g22720.1 68418.m02654 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 422

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 265 TTANTTRRWCSLSQPTPGVTAWRSD--TVAAWSEVPSSTLGV*RLSKYCFHR 414
           TT+  ++RW SL   TPG+    +D     A+       LG  R  K C H+
Sbjct: 47  TTSVLSKRWRSLWLSTPGLVLISNDFTDYNAFVSFVDKFLGFSREQKLCLHK 98


>At4g35000.1 68417.m04963 L-ascorbate peroxidase 3 (APX3) identical
           to ascorbate peroxidase 3 [Arabidopsis thaliana]
           GI:2444019, L-ascorbate peroxidase [Arabidopsis
           thaliana] gi|1523791|emb|CAA66926; similar to ascorbate
           peroxidase [Gossypium hirsutum] gi|1019946|gb|AAB52954
          Length = 287

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 202 GFKAQWTLQPAKYDNDVF 255
           GF   WT +P K+DN  F
Sbjct: 171 GFDGPWTQEPLKFDNSYF 188


>At1g03380.1 68414.m00317 expressed protein
          Length = 926

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +1

Query: 55  KVSWKFVPLWENNKVYFKIVNTQRNQYLT 141
           KV+   +P+W+N+K+ F ++++ R+   T
Sbjct: 671 KVTSGMLPVWQNSKISFHVMDSPRDSSST 699


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,222,168
Number of Sequences: 28952
Number of extensions: 235610
Number of successful extensions: 703
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)