Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0837
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0630 - 5470869-5471429                                           28   4.1  
03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798     28   5.4  

>08_01_0630 - 5470869-5471429
          Length = 186

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 6   NFHNP-PAPYFPVNRAKDTNGHARSKEGEGRYKG 104
           N H P P P  P +    T+G  R++ G GR +G
Sbjct: 49  NPHKPQPHPTIPSSTTTTTSGRRRNRRGRGRGRG 82


>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
          Length = 268

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
 Frame = -1

Query: 525 PQW----KLSRLVAPNAXRSLSKNCIP 457
           P W    KLSR++ PN  R +S  C+P
Sbjct: 146 PSWGLSQKLSRVIGPNRAREVSLTCMP 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,261,933
Number of Sequences: 37544
Number of extensions: 161055
Number of successful extensions: 349
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)