Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0837
         (537 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL049766-4|CAC33877.1| 1918|Homo sapiens zinc finger, NFX1-type ...    30   4.5  
AK023836-1|BAB14696.1| 1137|Homo sapiens protein ( Homo sapiens ...    30   4.5  
AB037825-1|BAA92642.1| 1925|Homo sapiens KIAA1404 protein protein.     30   4.5  

>AL049766-4|CAC33877.1| 1918|Homo sapiens zinc finger, NFX1-type
            containing 1 protein.
          Length = 1918

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 353  RLGCGNTNSXSCKXXSSTAHKRICCRLPCLSRHCLPHH 240
            RLGCG+  + +C    S +HK   C  PC    C   H
Sbjct: 1295 RLGCGHVCTRACHPYDS-SHKEFQCMKPCQKVICQEGH 1331


>AK023836-1|BAB14696.1| 1137|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13774 fis, clone PLACE4000326, weakly similar to
           NAM7 PROTEIN (NONSENSE-MEDIATED MRNA DECAY PROTEIN 1).
           ).
          Length = 1137

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 353 RLGCGNTNSXSCKXXSSTAHKRICCRLPCLSRHCLPHH 240
           RLGCG+  + +C    S +HK   C  PC    C   H
Sbjct: 587 RLGCGHVCTRACHPYDS-SHKEFQCMKPCQKVICQEGH 623


>AB037825-1|BAA92642.1| 1925|Homo sapiens KIAA1404 protein protein.
          Length = 1925

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 353  RLGCGNTNSXSCKXXSSTAHKRICCRLPCLSRHCLPHH 240
            RLGCG+  + +C    S +HK   C  PC    C   H
Sbjct: 1302 RLGCGHVCTRACHPYDS-SHKEFQCMKPCQKVICQEGH 1338


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,585,755
Number of Sequences: 237096
Number of extensions: 857493
Number of successful extensions: 1684
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1684
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)