Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0836
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    49   7e-07
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    30   0.25 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    30   0.33 
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.1  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   9.3  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    25   9.3  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 25/68 (36%), Positives = 36/68 (52%)
 Frame = +2

Query: 257  YRYRFHAPNHDTYEVSWVSFTTEKLETYYWNYMDHYICTRGDSDFALVEPLKYWRFRTLL 436
            Y Y F + N   Y  S ++F+      Y WNY+D  IC  G   + L + +KYWR R +L
Sbjct: 943  YDYNFWSKNECKYVKSNITFSANDSANYNWNYVDQLIC--GFETY-LPDSVKYWRARFVL 999

Query: 437  LPLYNPAT 460
            LP+   +T
Sbjct: 1000 LPMSTTST 1007


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -2

Query: 269 NDNGSYIEWRIWMSGSVSSDGDGRPDQRKFVEDPPNREQITLGGCCVGWFPALWGH 102
           ++N + I+ + W         +     R F E  P  EQ T GG C+   P +  H
Sbjct: 139 SNNKTTIDLKYWYCSCSQFSYNAFNSSRSFDEPMPKNEQETWGGRCLSHHPTICSH 194


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 75   STATPPPSKVAPQCGKPANAAPTKRYLLSIGRIFHKLTLVGSTITVTRYRPRHPYP 242
            ST  PPP   +     PA A+P       +G  +H  T  G+ +   + +P HP P
Sbjct: 905  STLPPPPPTASMTASAPAIASPPPP---KVGETYHPPTASGTRVPPVQ-QPSHPNP 956


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 427 DSTIASLQSGNETNSRRRLNPLRHISNSTRHDLDQLTDNFLKMTE 561
           +S IA LQ      SR++ NP + +       L  L +NF  + E
Sbjct: 396 ESLIALLQDSPAGYSRKKFNPSKEVGQEENIWLSDLENNFACLLE 440


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 428 TLLLPLYNPATKQILEDDSTHCDIYPTRRVMIWTN*PIISSK*PNCISIKSKG 586
           T +L L+N  T   + D   + DIY + +       P+I  K P  I  ++ G
Sbjct: 417 TRVLQLHNLITGDEIMDVQEYEDIYESVKTQFSNYGPLIDIKIPRSIGTRNSG 469


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 133 ALAGFPHCGATLDGGGVAVD 74
           A+ GF  CG  +D GGV  D
Sbjct: 231 AMVGFIICGIVIDCGGVRTD 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,130
Number of Sequences: 5004
Number of extensions: 63763
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)