Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0836
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0209 + 23607749-23607893,23607990-23608043,23608156-236084... 30 1.8
07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411... 29 3.2
11_01_0248 - 1910312-1910730,1910805-1911336 29 4.2
08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,456... 29 4.2
12_02_0396 + 18577574-18578056,18578094-18578723 28 7.3
10_01_0274 - 2901033-2901778,2902475-2902634 28 7.3
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 28 7.3
07_03_1453 - 26649922-26650064,26650148-26650244,26651260-266514... 28 7.3
03_02_0872 - 11983151-11983432,11983488-11983598,11983744-119840... 28 7.3
01_06_1285 - 35995943-35996087,35996909-35997697,35997802-359978... 28 7.3
12_02_0046 + 12830974-12832386 27 9.7
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641... 27 9.7
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415... 27 9.7
>04_04_0209 +
23607749-23607893,23607990-23608043,23608156-23608433,
23609524-23609894,23610033-23610096,23610472-23610603
Length = 347
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -2
Query: 296 RTCRGSVRGNDNGSYIEWRIWMSGSVSSDGDGRPDQRKFVEDPPNREQI 150
RT G + G G + R+ G++++ G G+P R+F+ N+E +
Sbjct: 79 RTALGELSGG--GGFFIRRVASPGALAARGPGKPLARRFIRPSNNKENV 125
>07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,
4110567-4110621,4111046-4111143,4112259-4112417,
4112518-4112577,4113436-4113624,4113749-4113802,
4113959-4114045,4114149-4114881,4115282-4115373,
4115739-4115812,4116097-4116199,4116342-4117204,
4117649-4117724,4117861-4117972,4118092-4118168,
4118272-4118352,4118710-4118789,4118860-4118875
Length = 1059
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +2
Query: 272 HAPNHDTYEVSWVSFTTEKLETYYWNYMDHYICTRGDSDFALVEPLKYWRFRTLLLPLYN 451
H H + S+ S T + ++ D +C A ++PL RF ++L+P++
Sbjct: 843 HQEEHGISDSSYASLATSAADAFHVMMSDSEVCLN-KKFHARIKPLYKQRFFSILMPIFL 901
Query: 452 PATKQ 466
K+
Sbjct: 902 SKIKE 906
>11_01_0248 - 1910312-1910730,1910805-1911336
Length = 316
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -2
Query: 479 RLREFVSLPDCREAIVESGTASISEAQLVRNHCRRAYKCNDPCSSSSKF 333
R+ + SLP+ R + + S+ ++ + + C+ Y C DP +SS+F
Sbjct: 125 RIPDLSSLPEPRLLMTHIPSQSLPDS-VAASGCKVVYLCRDPWIASSRF 172
>08_01_0525 +
4564885-4565221,4565337-4565476,4565582-4565677,
4566079-4566146,4566542-4566643,4567492-4567630,
4567758-4567898,4568241-4568297,4568400-4568459,
4568866-4568973,4569834-4569994,4570453-4570531,
4571357-4571490,4571846-4571951,4572244-4572432,
4572595-4572822,4573028-4573183,4573491-4573532,
4573752-4573868,4573945-4574121
Length = 878
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +1
Query: 412 ILAVPDSTIASLQSGNETNSRRRLNPLRHISNSTRHDLDQLTDNFLKMTELYFNKVKRPN 591
IL+ + ++ + G + R L LR + N T+ D Q+T TELY +K+ R
Sbjct: 364 ILSFEEISLKFISVGEQDALRTFL--LRRLDNLTKDDRMQITMISTWATELYLDKINRLL 421
Query: 592 KQRGXG 609
+ G G
Sbjct: 422 LEDGTG 427
>12_02_0396 + 18577574-18578056,18578094-18578723
Length = 370
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/47 (25%), Positives = 19/47 (40%)
Frame = +1
Query: 43 TRMK*SNLTVRQRRLPHHPKWPHSAGNQPTQHPPSVICSRLGGSSTN 183
T++ + L + +RL H KWP H +C G S +
Sbjct: 69 TKLLAAKLDLLMKRLDDHEKWPQGTVKALDSHVTCEVCGNTGHSGND 115
>10_01_0274 - 2901033-2901778,2902475-2902634
Length = 301
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 87 PPPSKVAPQCGKPANAAP 140
PPP AP+CG+PA P
Sbjct: 220 PPPPTPAPECGQPAPEYP 237
>09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +1
Query: 91 HHPKWPHSAGNQPTQH--PPS-VICSRLGGSSTNLRWSGLPSPSLDTDPDIHI--RHSI* 255
H PHS+G+ P Q+ PP+ S+L + ++ S P+PS+ P+ + +++
Sbjct: 860 HSSMMPHSSGSIPVQNSLPPAPPSASQLQVHAPPVQGSVPPNPSIMHTPNAPMPSHNTLP 919
Query: 256 LPLSFPRTEPRH 291
LP P P H
Sbjct: 920 LPPMHPSGNPAH 931
>07_03_1453 -
26649922-26650064,26650148-26650244,26651260-26651418,
26651478-26651603
Length = 174
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 66 HCASTATPPPSKVAPQCGKPANAAPTKRYLLSIGRIFHKLTLVGSTIT 209
H + PPP + P+C + APT+ +LLS+ ++ L+ + ++
Sbjct: 64 HLRLASAPPP--LPPRCFQLVPPAPTRSFLLSVELVWPGAVLMNTYLS 109
>03_02_0872 -
11983151-11983432,11983488-11983598,11983744-11984007,
11984038-11984163,11984257-11984481,11984757-11985311,
11985390-11985695,11985815-11986369
Length = 807
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 139 GAALAGFPHCGATLDGGGVAVDAQ 68
GAA AG GA + GGGVAV A+
Sbjct: 136 GAASAGGGVAGAVVGGGGVAVSAR 159
>01_06_1285 -
35995943-35996087,35996909-35997697,35997802-35997871,
35997989-35998220
Length = 411
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 117 GKPANAAPTKRYLLSIGRIFHKLTLVGSTI--TVTRYRPRHPYPP 245
G A+ L+S G + K TL + T YRPR P PP
Sbjct: 265 GGRTRASSVLMQLISCGSVSVKSTLASPVMARTAAHYRPRPPRPP 309
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 39 VNENEVIESHCASTATPPPSKVAPQCGKPA 128
V ++ C + + PPP +VAPQ P+
Sbjct: 220 VPASKATRQSCVTASAPPPRRVAPQPAPPS 249
>08_01_0722 +
6412654-6412860,6413142-6413687,6413745-6413877,
6413917-6414035,6414128-6414883,6415209-6415258,
6415560-6416679
Length = 976
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/47 (25%), Positives = 18/47 (38%)
Frame = +1
Query: 43 TRMK*SNLTVRQRRLPHHPKWPHSAGNQPTQHPPSVICSRLGGSSTN 183
T + + L + +RL H KWP H +C G S +
Sbjct: 130 TELLAAKLDLLMKRLDDHEKWPQGTVKALDSHVTCEVCGNTGDSGND 176
>06_01_0580 +
4148969-4149101,4149394-4149546,4149682-4150095,
4150218-4150294,4151479-4152699,4153057-4153128
Length = 689
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 175 STNLRWSGLPSPSLDTDPDIH 237
S+N+ WS +PS L +D IH
Sbjct: 567 SSNIIWSSMPSTQLPSDTQIH 587
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,733,831
Number of Sequences: 37544
Number of extensions: 457635
Number of successful extensions: 1660
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1657
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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