Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0836
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05) 42 6e-04
SB_38971| Best HMM Match : SRCR (HMM E-Value=0) 31 0.61
SB_10010| Best HMM Match : HLH (HMM E-Value=8.5e-09) 29 2.4
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 29 2.4
SB_52728| Best HMM Match : Herpes_UL3 (HMM E-Value=1.7) 29 3.2
SB_40314| Best HMM Match : Patched (HMM E-Value=1.3e-08) 29 4.3
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 29 4.3
SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0) 28 5.7
SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27) 28 5.7
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_59101| Best HMM Match : PT (HMM E-Value=0.026) 28 7.5
SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_39598| Best HMM Match : SirA (HMM E-Value=5) 27 9.9
SB_54396| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
Length = 1023
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Frame = +3
Query: 141 TKRYLLSIGRIFHKLTLV--GSTITVTRYRPRHP 236
T Y LS+GR H+L+++ S I VTRYRPRHP
Sbjct: 724 TDEYFLSLGRNLHRLSVIPNRSQINVTRYRPRHP 757
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 257 YRYRFHAPNHDTYEVSWVSFTTEKLETYYWNYMDHYICTRGDSDFA 394
YRYR Y+ F ++L+ Y WNY+D +I GD +F+
Sbjct: 765 YRYRLWTGKGVDYQPHQAEFQHDELDKYNWNYLDQHII--GDQEFS 808
>SB_38971| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2436
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 94 HPKWPHSAGNQPTQHPPSVICSRLGGSSTNLRWSGLPSPSL 216
HP ++A + PT PP+V SS +LRW +P S+
Sbjct: 1435 HPIVRYTAEDVPTTAPPNVRILNKTSSSIDLRWDAIPIKSV 1475
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 94 HPKWPHSAGNQPTQHPPSVICSRLGGSSTNLRWSGLPSPSL 216
HP ++A + PT PP+V SS +LRW +P S+
Sbjct: 1703 HPIVRYTAEDVPTTAPPNVRILNKTSSSIDLRWDAIPIKSV 1743
>SB_10010| Best HMM Match : HLH (HMM E-Value=8.5e-09)
Length = 227
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Frame = -2
Query: 560 SVILRKLSVSWSKS*RVEL--DICRSGLSRLREFVSLPDCREAI------VESGTASISE 405
SV+LR+L S++ S + CR+ L+ L + +LP R A+ + T+ +++
Sbjct: 126 SVLLRQLFESYNSSVSTTNPEEFCRTVLAWLDQHCTLPSLRPAVLAALRDISRTTSILTD 185
Query: 404 AQLVRNHCRRAYKCNDPCSSS 342
LV R+A +DP + S
Sbjct: 186 PSLVPGEARQAASGSDPTNLS 206
>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2060
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/60 (35%), Positives = 25/60 (41%)
Frame = -2
Query: 509 ELDICRSGLSRLREFVSLPDCREAIVESGTASISEAQLVRNHCRRAYKCNDPCSSSSKFP 330
ELD +R RE V E SI A +R RRAYKC PC ++ P
Sbjct: 858 ELDSSLQPCARRREHVFKRKDETCPDEIADGSIGRAGSLRR--RRAYKCKIPCVFTNSLP 915
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 48 NEVIESHCASTATPP-PSKVAPQCGKPANAAPTKR 149
N+V+++H S T P P+ + P G P + KR
Sbjct: 554 NDVVKTHMTSVVTKPKPTSIPPTTGSPKDGVLAKR 588
>SB_52728| Best HMM Match : Herpes_UL3 (HMM E-Value=1.7)
Length = 398
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 42 NENEVIESHCASTATPPPSKVAPQCGKPANAAPTKR 149
+EN+ E+ AS PPP +VA C A T R
Sbjct: 289 DENDCAETKTASFPNPPPPRVAVSCKSATVARVTPR 324
>SB_40314| Best HMM Match : Patched (HMM E-Value=1.3e-08)
Length = 667
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 233 SISAIQYNYRYRFHAPNHDTYEVSWVSF 316
S SA+Q NYR + APN+D +E +SF
Sbjct: 58 STSAVQINYRMQ--APNNDGHETKLLSF 83
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 263 NGSYIEWRIWMSGSVSSDGDGRPDQRKFVEDPP 165
NG+Y W +W SV+ G G ++ +F +PP
Sbjct: 782 NGNYSNWSLWTPCSVTC-GVGIMERNRFCTNPP 813
>SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Frame = +2
Query: 194 RVYHHRH*IQTQTSI----SAIQYNYRYRFHAPNHDTYEVS--WVSFT 319
R HHR + T I S + N Y+ H P DTY ++ W+S+T
Sbjct: 9 RHQHHRPTLDIYTIIQPWISTLSPNPGYQHHHPTLDTYTITQPWISYT 56
>SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 251 YNYRYRFHAPNHDTYEVSWVSFTTEKLET 337
Y Y +RF+ P T +SWVSF L T
Sbjct: 59 YYYLFRFYIPASLTVVMSWVSFWISPLAT 87
>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
Length = 373
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 278 PNHDTYEVSWVSFTTEKLETYYWNYMDHYI 367
P D + +F + KL YYW Y+ H I
Sbjct: 260 PMEDVFRRPNFNFESSKLMYYYWTYISHRI 289
>SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)
Length = 592
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 101 SGPTVRETSQRSTHQALSALDWEDLPQTYAGRVYHHR 211
+ P V T+ R+ H+ LSA + D+P+++ VY HR
Sbjct: 411 TSPRVTSTTFRTRHRTLSARFFSDVPESH---VYVHR 444
>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 236 ISAIQYNYRYRFHAPNHDTYEVSWVSFTTEKLETY 340
I+A+Q Y+ F+ N+D Y ++F +K+ Y
Sbjct: 224 ITAVQIIYKNAFNTTNYDLYSPYGITFRVKKMVIY 258
>SB_59101| Best HMM Match : PT (HMM E-Value=0.026)
Length = 386
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 82 RLPHHPKWPHSAGNQPTQHPPSVICSRLGGSSTN--LRWSGLPSPSLDTDPDIHIRHSI 252
RL H+ WP + T P+ + GS L WS +PS ++ + + R+SI
Sbjct: 127 RLSHNSSWPCVTASSDTVRLPNNSWPQPVGSHNPSCLPWSSMPSNAITANGSLMSRNSI 185
>SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 70 VRQRRLPHHPKWPHSAGNQP-TQHPPSV 150
+RQR L +HP H+ P QHPP V
Sbjct: 93 LRQRTLRYHPLKQHALTYHPLKQHPPEV 120
>SB_39598| Best HMM Match : SirA (HMM E-Value=5)
Length = 425
Score = 27.5 bits (58), Expect = 9.9
Identities = 24/92 (26%), Positives = 37/92 (40%)
Frame = -2
Query: 542 LSVSWSKS*RVELDICRSGLSRLREFVSLPDCREAIVESGTASISEAQLVRNHCRRAYKC 363
L++ WS + ELD L + PD E ++ + I L + +R+ C
Sbjct: 92 LTIEWSYDSQGELDA-------LEDIFKAPDWDEPALKPALSCILAPALCAVYGKRSSTC 144
Query: 362 NDPCSSSSKFPVFLS*TKPTTPRTCRGSVRGN 267
PC + P L + PR C G RG+
Sbjct: 145 QGPC----RIPAGL---YGSYPRVCSGRTRGS 169
>SB_54396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 106 PHSAGNQPTQHPPSVICSRLGGSSTNLRWSGLPSPSLDTDPDI 234
PH + T VI S +R SG+PS LD++P +
Sbjct: 69 PHVDRTEQTTRVTDVITSHTSVIVQAMRQSGIPSGGLDSEPTL 111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,203,369
Number of Sequences: 59808
Number of extensions: 509072
Number of successful extensions: 1698
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1697
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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