Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0836
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045638-7|AAQ91907.1|  242|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF045638-6|AAO44909.1|  212|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF045638-5|AAC02562.3|  544|Caenorhabditis elegans Hypothetical ...    29   2.8  
AL032636-2|CAA21603.1|  212|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z81552-3|CAB04486.1|  470|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AC024793-7|AAF60687.1|   91|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF045638-7|AAQ91907.1|  242|Caenorhabditis elegans Hypothetical
           protein C35B1.2c protein.
          Length = 242

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 311 KPTTPRTCRGSVRGNDNGSYIEWRIWMSGSVS 216
           +P+T +T R  VR + +G + +W I+M  +VS
Sbjct: 117 EPSTSKTWRIFVRKDGSGMHFDWPIFMDSAVS 148


>AF045638-6|AAO44909.1|  212|Caenorhabditis elegans Hypothetical
           protein C35B1.2b protein.
          Length = 212

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 311 KPTTPRTCRGSVRGNDNGSYIEWRIWMSGSVS 216
           +P+T +T R  VR + +G + +W I+M  +VS
Sbjct: 117 EPSTSKTWRIFVRKDGSGMHFDWPIFMDSAVS 148


>AF045638-5|AAC02562.3|  544|Caenorhabditis elegans Hypothetical
           protein C35B1.2a protein.
          Length = 544

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 311 KPTTPRTCRGSVRGNDNGSYIEWRIWMSGSVS 216
           +P+T +T R  VR + +G + +W I+M  +VS
Sbjct: 117 EPSTSKTWRIFVRKDGSGMHFDWPIFMDSAVS 148


>AL032636-2|CAA21603.1|  212|Caenorhabditis elegans Hypothetical
           protein Y40B1B.5 protein.
          Length = 212

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 81  ATPPPSKVAPQCGKPANAAPTKRYLLSIGR 170
           A PPP K AP   K   AAPT   + S+GR
Sbjct: 31  APPPPQKAAPAAPKTLKAAPTFA-MESLGR 59


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 90  PPSKVAPQCGKPANAAPTKR 149
           P S VAP+   PA+AAPT+R
Sbjct: 236 PSSAVAPRRAPPASAAPTRR 255


>Z81552-3|CAB04486.1|  470|Caenorhabditis elegans Hypothetical
           protein F56G4.4 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -1

Query: 492 QWVESSSRICFVAGL*RGNSRVRNRQYFRGSTSAKSLSPRVQ 367
           QWV +  R C +  +  GN+R     + RG      L  R++
Sbjct: 4   QWVSTGKRFCDICKVWFGNNRASQDHHDRGERHKAMLQQRIR 45


>AC024793-7|AAF60687.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48G1BL.6 protein.
          Length = 91

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +1

Query: 424 PDSTIASLQSGNETNSRR--RLNPLRHISNSTRHDLDQLTDNF-LKMTELYFNKVKRPNK 594
           PD ++ S ++    N +   +L P RH SN+T  D D  T +  L    L+   ++ P++
Sbjct: 13  PDFSLLSNKTHKSRNPKPPVKLLPYRHGSNTTSSDSDSYTSDLDLPTMRLHHQWLRSPSR 72

Query: 595 QR 600
            +
Sbjct: 73  SK 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,163,193
Number of Sequences: 27780
Number of extensions: 366674
Number of successful extensions: 1142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)