Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0836
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26900.1 68415.m03227 bile acid:sodium symporter family prote...    31   0.65 
At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger) fa...    31   0.87 
At5g66770.1 68418.m08416 scarecrow transcription factor family p...    29   2.0  
At4g16670.1 68417.m02518 expressed protein                             29   3.5  
At3g50650.1 68416.m05540 scarecrow-like transcription factor 7 (...    28   4.6  
At2g25980.1 68415.m03120 jacalin lectin family protein similar t...    28   6.1  
At1g43690.1 68414.m05019 ubiquitin interaction motif-containing ...    27   8.1  

>At2g26900.1 68415.m03227 bile acid:sodium symporter family protein
           low similarity to SP|Q12908 Ileal sodium/bile acid
           cotransporter {Homo sapiens}; contains Pfam profile
           PF01758: Sodium Bile acid symporter family
          Length = 409

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 145 SVICSRLGGSSTNLRWSGLPSPSLDTD 225
           SV+C  LGGS   + W  LP P+ D D
Sbjct: 379 SVVCMALGGSGLAVFWRNLPIPADDKD 405


>At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 272

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 65  SLCVNGDSPTIQSGPTVRETSQRSTHQALSALDWED 172
           +L VNGD P I+ G  +R  S  +T +  S   W D
Sbjct: 45  TLDVNGDGPAIEPGSLLRTISWETTFEQDSLQSWND 80


>At5g66770.1 68418.m08416 scarecrow transcription factor family
           protein
          Length = 584

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 151 ICSRLGGSSTNLRWSGLPSPSLDTDPD 231
           + +R  G  T +R SG+P+PSL   P+
Sbjct: 340 LATRTSGKPTQIRVSGIPAPSLGESPE 366


>At4g16670.1 68417.m02518 expressed protein 
          Length = 429

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 39  VNENEVIESHCASTATPPPSKVAP-QCGKPANAAPTKRYLLSIGRIFHKLTLVGSTITVT 215
           +N+N  I      T+  P +   P Q GK A+A   +R   +IG+ FH    VG  ++  
Sbjct: 92  LNKNPNISQLADVTSLAPVAPPPPLQTGKLASAVHARR-TGTIGKWFHHREFVGGKVSAV 150

Query: 216 RYRPR 230
           + R R
Sbjct: 151 KKRDR 155


>At3g50650.1 68416.m05540 scarecrow-like transcription factor 7
           (SCL7) 
          Length = 542

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 151 ICSRLGGSSTNLRWSGLPSPSLDTDP 228
           + +R  G  T +R SG+P+PSL   P
Sbjct: 294 LATRSSGKPTRIRISGIPAPSLGDSP 319


>At2g25980.1 68415.m03120 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 449

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 203 GRPDQRKFVEDPPNREQITLGGCCVGWFPALWGHFG 96
           GR  +R FV +   R  + L G C     AL  HFG
Sbjct: 258 GRKSERTFVFESKGRALVGLHGRCCWAIDALGAHFG 293


>At1g43690.1 68414.m05019 ubiquitin interaction motif-containing
           protein contains Pfam profile PF02809: Ubiquitin
           interaction motif
          Length = 599

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 124 QPTQHPPSVICSRLGGSSTNLRWSGLPSPSL 216
           +P QH P V C R   S     WSG P PS+
Sbjct: 569 KPVQHAPLVDCIRTRWSRAACSWSGDP-PSI 598


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,500,537
Number of Sequences: 28952
Number of extensions: 349274
Number of successful extensions: 1115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)