Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0835
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   3.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.6  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   9.8  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   9.8  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 477 PNAIQHFAARMXPLVNVGXNDT 412
           PN I H+   + PL  +   DT
Sbjct: 31  PNVIDHYFRDLQPLFKLACTDT 52


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 389 PSYTCIASCNMQICCRNMLHFLGT 318
           P Y C   CN  I C N +   GT
Sbjct: 470 PIYECNKRCNCDIDCINRVVQRGT 493


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like
          GPCR protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 90 IQVRDVLVINLVYFILFVT 34
          + +R V+ + ++Y I+FVT
Sbjct: 35 LSMRMVIPLTIIYMIIFVT 53


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 11/52 (21%), Positives = 21/52 (40%)
 Frame = -2

Query: 431 MLXPMIQLSVHLQEPSYTCIASCNMQICCRNMLHFLGTV*WLHHTWPMLLCN 276
           ++  +  + + L+ PS  CI   +  I C     +     + H  WP  + N
Sbjct: 121 VMHSVTSVGIDLEMPSVECIVFNSGTILCVPFTTYTPVCEYDHTWWPYDILN 172


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
          protein.
          Length = 125

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 57 VYFILFVTDKLCAICIEDY 1
          +Y +LFV   +  +  EDY
Sbjct: 3  IYILLFVLVTITCVIAEDY 21


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
          protein.
          Length = 125

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 57 VYFILFVTDKLCAICIEDY 1
          +Y +LFV   +  +  EDY
Sbjct: 3  IYILLFVLVTITCVIAEDY 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,583
Number of Sequences: 438
Number of extensions: 2258
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)