Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0833
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    27   1.6  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    27   2.8  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    26   3.7  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    25   6.4  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   8.5  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 89  SKLHQTQNPFETSYKPSKIIGEEENGISAEITERD 193
           SK+ ++QN FE   K  KI    E GI A  TE++
Sbjct: 49  SKITKSQNLFERHGKNKKIAVNSEYGIIAVATEKN 83


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 508 LIVFTFSPLHASAYTFSIFCSEQVRYYF*FLYICV 404
           +++  F      AYTF +  + Q  Y+F ++ IC+
Sbjct: 318 VLILPFLVDAVDAYTFGVLKNVQTEYFFCYVGICI 352


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 269 VEAMEIVEMYCDLI-LARFGLVTQMKELDEGLAEAISTLIWVAPRM 403
           ++A  I+ M   L+ LA FG+  Q++ L +   + + T  W+AP +
Sbjct: 128 IKAANILTMKDGLVKLADFGVSGQLESLRDKNDDFVGTPFWMAPEV 173


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 412 ICVHPRSYPYQSGYSFSKTFIEFLHLSDKTKPS*YQVTVHFYYFHSL 272
           I ++P  +P +  Y  SK F   L + + T+P        +  FH L
Sbjct: 195 IMLYPEEHPER--YKLSKAFANILGIREGTRPDIVSYLWQYIKFHRL 239


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -3

Query: 421  FLYICVHPRSYP---YQSGYSFSKTFIEFL 341
            FL++CV    +    Y  G+SFSKT + F+
Sbjct: 1525 FLFVCVDVVVFEVLGYLEGWSFSKTLLGFV 1554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,852
Number of Sequences: 5004
Number of extensions: 48378
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)