Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0833
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.7  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   3.0  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   4.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.0  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   7.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.3  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 529 HLVLQFVLIVFTFSPLHASAYTFSIFCS 446
           H +L  + I+FTF  L  +     IFC+
Sbjct: 48  HYLLALLYILFTFLALLGNGLVIWIFCA 75


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 122 TSYKPSKIIGEEENGISAEITE 187
           T +    I G+EENG+++E T+
Sbjct: 108 TIHSIHSIDGDEENGLTSESTD 129


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 143 IIGEEENGISAEITE 187
           I G+EENG+++E T+
Sbjct: 86  IDGDEENGLTSESTD 100


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 509  DKLKHQMSVHSPP 547
            D + HQ+ VH+PP
Sbjct: 1355 DTVTHQLIVHAPP 1367


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 492 SRLYMHQHTPFPYFAVSKSD 433
           +R Y   H PF Y  V  SD
Sbjct: 488 ARQYRLNHKPFTYHIVVNSD 507


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 492 SRLYMHQHTPFPYFAVSKSD 433
           +R Y   H PF Y  V  SD
Sbjct: 488 ARQYRLNHKPFTYHIVVNSD 507


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 492 SRLYMHQHTPFPYFAVSKSD 433
           +R Y   H PF Y  V  SD
Sbjct: 114 ARQYRLNHKPFTYHIVVNSD 133


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 38  TKIIAKKLFKNKDVFDKSKLHQTQN 112
           +K+ AKK+ K+KD+        TQ+
Sbjct: 692 SKLFAKKVKKDKDIILNVPKESTQS 716


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,371
Number of Sequences: 438
Number of extensions: 3016
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)