BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0832 (508 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 0.92 SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 28 0.92 SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 1.2 SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 2.1 SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 3.7 SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 4.9 SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 4.9 SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 4.9 SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 4.9 SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 4.9 SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 4.9 SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 6.5 SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 6.5 SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 25 8.6 SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 8.6 SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 25 8.6 SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 25 8.6 SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 25 8.6 SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.6 SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 25 8.6 >SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Schizosaccharomyces pombe|chr 1|||Manual Length = 738 Score = 27.9 bits (59), Expect = 0.92 Identities = 20/72 (27%), Positives = 35/72 (48%) Frame = +3 Query: 33 SSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 212 S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81 Query: 213 TEKTQKSLFDGI 248 +KS+ D + Sbjct: 82 NITNKKSVTDNL 93 >SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr 1|||Manual Length = 654 Score = 27.9 bits (59), Expect = 0.92 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +2 Query: 299 PLPDKDAIEAEKEKNKFLNGIENFDPTXLKHTETXEKNPLL 421 P D D I+ +E F NG+ +FD +K+ T K+P++ Sbjct: 159 PTCDSD-IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPVM 198 >SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sfc3|Schizosaccharomyces pombe|chr 2|||Manual Length = 1339 Score = 27.5 bits (58), Expect = 1.2 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Frame = +2 Query: 236 IRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFL----NGIENFDPTXLKHTETX 403 + R + + + +H E+ E P+ ++ + EKEK+ + +E+ P H T Sbjct: 789 LSRRKSMPAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQ 848 Query: 404 EKNPL 418 +K+P+ Sbjct: 849 QKSPV 853 >SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces pombe|chr 1|||Manual Length = 674 Score = 26.6 bits (56), Expect = 2.1 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = -1 Query: 217 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 86 SV + DG + + +++RQ V+ P + F + +GR F+E Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127 >SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 426 Score = 25.8 bits (54), Expect = 3.7 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -3 Query: 224 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 120 G ++G +S +LFIGVD G+ F LQ Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419 >SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor complex subunit, Fip1 homolog |Schizosaccharomyces pombe|chr 1|||Manual Length = 344 Score = 25.4 bits (53), Expect = 4.9 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +2 Query: 251 EVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 373 EV +++ + T E P D DA+ KN F +E+FD Sbjct: 87 EVKTTEPQDLSTAETAPKVDIDAVPTIDGKNIFEIDLESFD 127 >SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 25.4 bits (53), Expect = 4.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149 W+FSVA S IFS + T R ++ Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147 >SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 25.4 bits (53), Expect = 4.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149 W+FSVA S IFS + T R ++ Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147 >SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 25.4 bits (53), Expect = 4.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149 W+FSVA S IFS + T R ++ Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147 >SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 25.4 bits (53), Expect = 4.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149 W+FSVA S IFS + T R ++ Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147 >SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces pombe|chr 3|||Manual Length = 497 Score = 25.4 bits (53), Expect = 4.9 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -1 Query: 229 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 131 FW +S+ S G I SL + RQ + +PSS Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115 >SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 855 Score = 25.0 bits (52), Expect = 6.5 Identities = 17/73 (23%), Positives = 37/73 (50%) Frame = +3 Query: 6 AECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 185 A+ L +SS +Y +++ + ++ + K A ++ TS D +N K Sbjct: 727 ADMMMLQEGASSMVY-YSLTNLDNPGATVNEAAKTAATIEQNEHEIQTSV--DPISNVKA 783 Query: 186 VLPSAEDVATEKT 224 +LP+A+DV+++ + Sbjct: 784 ILPNADDVSSKNS 796 >SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 398 Score = 25.0 bits (52), Expect = 6.5 Identities = 19/57 (33%), Positives = 33/57 (57%) Frame = +3 Query: 84 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 254 P K L K+ +L+S L+ SCL+D T+ K ++ +EKTQ+ +FD +++ Sbjct: 14 PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKR 63 >SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pombe|chr 3|||Manual Length = 323 Score = 24.6 bits (51), Expect = 8.6 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = +2 Query: 218 EDPEVFIRRY-REVDSSQLKHTETQEK 295 ED ++FI+RY R VDS+ L+ E + + Sbjct: 21 EDLKIFIKRYERSVDSTLLEIDENKRE 47 >SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 1822 Score = 24.6 bits (51), Expect = 8.6 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = +2 Query: 218 EDPEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 373 + PE ++Y+E D K + P+PD A A EK K +G+ N + Sbjct: 89 KSPEGIEQKYQEEDLKDDKKSNETIATPVPDA-ASRASLEKQK--SGLTNLE 137 >SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||Manual Length = 247 Score = 24.6 bits (51), Expect = 8.6 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = +2 Query: 218 EDPEVFIRRY-REVDSSQLKHTETQEK 295 ED ++FI+RY R VDS+ L+ E + + Sbjct: 21 EDLKIFIKRYERSVDSTLLEIDENKRE 47 >SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 838 Score = 24.6 bits (51), Expect = 8.6 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +2 Query: 332 KEKNKFLNGIENFDPTXLKHTETXEKNPLLTKXV 433 +E F+ I+NF L+H ET LL K + Sbjct: 150 EETVAFIQSIDNFVEKILRHAETSAIMDLLLKFI 183 >SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 620 Score = 24.6 bits (51), Expect = 8.6 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = +2 Query: 227 EVFIRRYREVDSS--QLKHTETQEKNPLPDKDAIEAEKEKN 343 EV ++E SS ++ E+N P+ + +E EKE+N Sbjct: 404 EVEANNHQEKPSSLPAVEQINVNEENNTPETEGLEDEKEEN 444 >SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1236 Score = 24.6 bits (51), Expect = 8.6 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%) Frame = +3 Query: 45 IY*FTMACSVSDTPS---LKDLPKVATDLK 125 +Y F+ CS SDT S LK P++ TD++ Sbjct: 75 VYDFSNLCSDSDTFSGSELKKCPQIETDIQ 104 >SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 550 Score = 24.6 bits (51), Expect = 8.6 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +1 Query: 154 VSVTSTPMKRLCFRLLKTSPLR 219 V +T +P + CFRL + PLR Sbjct: 134 VDITLSPGEEKCFRLKRRIPLR 155 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,762,976 Number of Sequences: 5004 Number of extensions: 33546 Number of successful extensions: 144 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 135 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 144 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 202220600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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