Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0832
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 0.92
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 28 0.92
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 1.2
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 2.1
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 3.7
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 4.9
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 4.9
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 4.9
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 4.9
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 4.9
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 4.9
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 6.5
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 6.5
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 25 8.6
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 8.6
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 25 8.6
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 25 8.6
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 25 8.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.6
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 25 8.6
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 0.92
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +3
Query: 33 SSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 212
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 213 TEKTQKSLFDGI 248
+KS+ D +
Sbjct: 82 NITNKKSVTDNL 93
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.9 bits (59), Expect = 0.92
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 299 PLPDKDAIEAEKEKNKFLNGIENFDPTXLKHTETXEKNPLL 421
P D D I+ +E F NG+ +FD +K+ T K+P++
Sbjct: 159 PTCDSD-IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPVM 198
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 27.5 bits (58), Expect = 1.2
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +2
Query: 236 IRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFL----NGIENFDPTXLKHTETX 403
+ R + + + +H E+ E P+ ++ + EKEK+ + +E+ P H T
Sbjct: 789 LSRRKSMPAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQ 848
Query: 404 EKNPL 418
+K+P+
Sbjct: 849 QKSPV 853
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 217 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 86
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 224 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 120
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 4.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 251 EVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 373
EV +++ + T E P D DA+ KN F +E+FD
Sbjct: 87 EVKTTEPQDLSTAETAPKVDIDAVPTIDGKNIFEIDLESFD 127
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 229 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 131
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 6.5
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +3
Query: 6 AECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 185
A+ L +SS +Y +++ + ++ + K A ++ TS D +N K
Sbjct: 727 ADMMMLQEGASSMVY-YSLTNLDNPGATVNEAAKTAATIEQNEHEIQTSV--DPISNVKA 783
Query: 186 VLPSAEDVATEKT 224
+LP+A+DV+++ +
Sbjct: 784 ILPNADDVSSKNS 796
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 6.5
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +3
Query: 84 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 254
P K L K+ +L+S L+ SCL+D T+ K ++ +EKTQ+ +FD +++
Sbjct: 14 PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKR 63
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 218 EDPEVFIRRY-REVDSSQLKHTETQEK 295
ED ++FI+RY R VDS+ L+ E + +
Sbjct: 21 EDLKIFIKRYERSVDSTLLEIDENKRE 47
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 24.6 bits (51), Expect = 8.6
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 218 EDPEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 373
+ PE ++Y+E D K + P+PD A A EK K +G+ N +
Sbjct: 89 KSPEGIEQKYQEEDLKDDKKSNETIATPVPDA-ASRASLEKQK--SGLTNLE 137
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 218 EDPEVFIRRY-REVDSSQLKHTETQEK 295
ED ++FI+RY R VDS+ L+ E + +
Sbjct: 21 EDLKIFIKRYERSVDSTLLEIDENKRE 47
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 332 KEKNKFLNGIENFDPTXLKHTETXEKNPLLTKXV 433
+E F+ I+NF L+H ET LL K +
Sbjct: 150 EETVAFIQSIDNFVEKILRHAETSAIMDLLLKFI 183
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.6 bits (51), Expect = 8.6
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 227 EVFIRRYREVDSS--QLKHTETQEKNPLPDKDAIEAEKEKN 343
EV ++E SS ++ E+N P+ + +E EKE+N
Sbjct: 404 EVEANNHQEKPSSLPAVEQINVNEENNTPETEGLEDEKEEN 444
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 24.6 bits (51), Expect = 8.6
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +3
Query: 45 IY*FTMACSVSDTPS---LKDLPKVATDLK 125
+Y F+ CS SDT S LK P++ TD++
Sbjct: 75 VYDFSNLCSDSDTFSGSELKKCPQIETDIQ 104
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 154 VSVTSTPMKRLCFRLLKTSPLR 219
V +T +P + CFRL + PLR
Sbjct: 134 VDITLSPGEEKCFRLKRRIPLR 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,976
Number of Sequences: 5004
Number of extensions: 33546
Number of successful extensions: 144
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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