Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0832
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 1.2
05_03_0261 + 11214086-11214148,11215019-11215462,11216504-112166... 29 1.6
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 29 2.1
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 2.1
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 28 5.0
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 28 5.0
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 27 6.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 27 6.5
10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658... 27 8.7
04_04_1085 - 30719921-30719960,30720206-30720351,30720469-307205... 27 8.7
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 117 DLKSQLEGFNTSCLRDVDTNEKIVL 191
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>05_03_0261 +
11214086-11214148,11215019-11215462,11216504-11216666,
11218145-11218441,11218842-11218858
Length = 327
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +2
Query: 218 EDPEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGI 361
E+ E I++ RE++S +KH+ET+++ + + + ++ LNGI
Sbjct: 172 EEIEENIQKTREIESEIVKHSETEKEYIMKESELMKGVSIAEFELNGI 219
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +1
Query: 124 RVSSKASTPAVSVTSTPMKRLCFR 195
+VSS++S+P SVT+ ++ +CFR
Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 79 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 171
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 93 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 185
K+L + DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 93 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 185
K+L + DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -1
Query: 247 IPSNKDFWVFSVATSSADGSTIFSLVSTSRRQLVL 143
+PSN+ + ++ TSS++GS FSL +++ + L
Sbjct: 500 LPSNESWDYYASRTSSSNGSVYFSLQNSTNSDMDL 534
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 28 PLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKR 183
P P I +++PAP PP ++S R+P SSK P P R
Sbjct: 651 PPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANR 702
>10_02_0195 +
6578384-6578629,6578710-6579300,6586302-6587512,
6587593-6587844,6587932-6588042,6588133-6588214,
6588299-6588382,6588464-6588658
Length = 923
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 224 PEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAE 331
P+ RR + +D ++ KH TQE +DA +A+
Sbjct: 258 PQALERRKKLLDLAKKKHISTQEAQSYKKRDAYKAK 293
>04_04_1085 -
30719921-30719960,30720206-30720351,30720469-30720546,
30720649-30720715,30720948-30721090,30721504-30721535,
30721769-30722168,30722540-30722601,30722716-30722892,
30723078-30723201,30723590-30723760
Length = 479
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +3
Query: 66 CSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVL--PSAEDVATEK 221
C + DT +K PK+ +D+K Q+E + + + + + +V+ + +DV +E+
Sbjct: 355 CDIEDT-LIKSNPKLTSDVKVQVEAEDMAMMLQLKPEDFVVVLDENGKDVTSEQ 407
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,873,923
Number of Sequences: 37544
Number of extensions: 248121
Number of successful extensions: 830
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -