Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0832
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 32 0.26
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 30 1.0
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 1.8
At1g51900.1 68414.m05850 hypothetical protein 29 2.4
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 28 3.1
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran... 28 3.1
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 28 4.2
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low... 27 5.5
At5g20540.1 68418.m02439 expressed protein 27 7.3
At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794... 27 7.3
At3g46750.1 68416.m05075 hypothetical protein 27 9.6
At3g10720.2 68416.m01291 pectinesterase, putative contains simil... 27 9.6
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 31.9 bits (69), Expect = 0.26
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 100 SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRS*FEPAE 273
SP ++ R S++ P+ S +S R + ++ PL R RSLYS+VSRS
Sbjct: 193 SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQSRSKS 252
Query: 274 AHRDSGEEPAS 306
R P S
Sbjct: 253 RSRSRSNSPVS 263
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 29.9 bits (64), Expect = 1.0
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +3
Query: 57 TMACSVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQ 227
T S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E
Sbjct: 74 TSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIV 133
Query: 228 KS 233
S
Sbjct: 134 SS 135
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 278 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 373
TE E + LPD ++ +K K + +N + N+D
Sbjct: 12 TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43
>At1g51900.1 68414.m05850 hypothetical protein
Length = 774
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 221 DPEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEK 334
DP+++IR Y E + K + T + + + D+IE K
Sbjct: 362 DPDIYIRSYEESPNEVYKFSLTDLEEEIMENDSIEGVK 399
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 221 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 102
++ G+ +KHNL IG+D AG + + LQ C ++G
Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
methyltransferase family protein similar to
N2,N2-dimethylguanosine tRNA methyltransferase [Homo
sapiens] GI:11066198; contains Pfam profile PF02005:
N2,N2-dimethylguanosine tRNA methyltransferase
Length = 599
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 227 EVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 373
E +R +E ++ K T K + +KDA EA KE+ NG+ N D
Sbjct: 45 EFLSKRKQEHEAKSSKRTRPASK--VIEKDASEASKEETPSENGMNNGD 91
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 27.9 bits (59), Expect = 4.2
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 69 SVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK 221
S SD+PS L+D+ ++ +LK L+G + VDTN AED A E+
Sbjct: 532 SDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN-----LDAEDRAAER 579
>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
similarity to DNA polymerase kappa [Mus musculus]
GI:14279087; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 785
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 224 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGE 99
GL G++ + +++ +T +AGV A L +VC D+ +
Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINK 255
>At5g20540.1 68418.m02439 expressed protein
Length = 384
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 72 VSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 218
++ TP + + T+ S +S RD D +E++ + +A DV E
Sbjct: 282 LNSTPKVSSISVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDNE 330
>At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794:
Domain of Unknown function
Length = 350
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 242 RYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFL 352
R++ + H E +EK+ LP +A E KEK K L
Sbjct: 260 RFKSLQMMCKTHFEEEEKDLLPMVEAAEMGKEKQKKL 296
>At3g46750.1 68416.m05075 hypothetical protein
Length = 415
Score = 26.6 bits (56), Expect = 9.6
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Frame = +2
Query: 122 EESARRLQHQLSP*RRHQ*KDCASVC*RRRH*EDPEVFIRRYREVDSSQLKHTETQEKNP 301
++ A++LQH LS +RH + A++ R ED EV REV + L + +
Sbjct: 67 KDKAKKLQHSLSTKKRHDEEGDATMSPFCRS-EDHEV-----REVGYASLSPRDKSKDRK 120
Query: 302 LPDKDAIEAEKEKNKFLNGIENFD----PTXLKHT--ETXEKNPLLTK 427
+ ++ E E+E ++L G ++ P LK T + +NP++T+
Sbjct: 121 VREEGG-EEEEEDPEYL-GAPMYESKKAPEELKETARQHPRENPVITE 166
>At3g10720.2 68416.m01291 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 619
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +1
Query: 31 LPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--- 201
LP + ++S + P + PP P P + S++ +P+++ STP +LC +L
Sbjct: 43 LPFEPPVESPFFPP--SQPPIFVPPSQPPS-LPPSQSQSPSLACKSTPYPKLCRTILNAV 99
Query: 202 KTSP 213
K+SP
Sbjct: 100 KSSP 103
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,369,406
Number of Sequences: 28952
Number of extensions: 186911
Number of successful extensions: 648
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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