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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0832
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)...    32   0.26 
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi...    30   1.0  
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d...    29   1.8  
At1g51900.1 68414.m05850 hypothetical protein                          29   2.4  
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f...    28   3.1  
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran...    28   3.1  
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si...    28   4.2  
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low...    27   5.5  
At5g20540.1 68418.m02439 expressed protein                             27   7.3  
At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794...    27   7.3  
At3g46750.1 68416.m05075 hypothetical protein                          27   9.6  
At3g10720.2 68416.m01291 pectinesterase, putative contains simil...    27   9.6  

>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
           nearly identical to SF2/ASF-like splicing modulator
           Srp30 [Arabidopsis thaliana] GI:4775270
          Length = 268

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +1

Query: 100 SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRS*FEPAE 273
           SP   ++ R  S++  P+ S +S        R +  ++ PL R RSLYS+VSRS      
Sbjct: 193 SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQSRSKS 252

Query: 274 AHRDSGEEPAS 306
             R     P S
Sbjct: 253 RSRSRSNSPVS 263


>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 786

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +3

Query: 57  TMACSVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQ 227
           T   S+ +  +  DLPK+  +  SQ E     + S    +DT E ++ P+AED   E   
Sbjct: 74  TSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIV 133

Query: 228 KS 233
            S
Sbjct: 134 SS 135


>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
           domain PF04931: DNA polymerase V
          Length = 1306

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 278 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 373
           TE  E + LPD   ++ +K K + +N + N+D
Sbjct: 12  TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43


>At1g51900.1 68414.m05850 hypothetical protein
          Length = 774

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 221 DPEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEK 334
           DP+++IR Y E  +   K + T  +  + + D+IE  K
Sbjct: 362 DPDIYIRSYEESPNEVYKFSLTDLEEEIMENDSIEGVK 399


>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein contains
           putative undecaprenyl diphosphate synthase domain
           [PF01255]; similar to S. cerevisiae dehydrodolichyl
           diphosphate synthetase (DEDOL-PP
           synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
          Length = 271

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 221 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 102
           ++ G+    +KHNL IG+D    AG  + +  LQ C ++G
Sbjct: 41  IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79


>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
           methyltransferase family protein similar to
           N2,N2-dimethylguanosine tRNA methyltransferase [Homo
           sapiens] GI:11066198; contains Pfam profile PF02005:
           N2,N2-dimethylguanosine tRNA methyltransferase
          Length = 599

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 227 EVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 373
           E   +R +E ++   K T    K  + +KDA EA KE+    NG+ N D
Sbjct: 45  EFLSKRKQEHEAKSSKRTRPASK--VIEKDASEASKEETPSENGMNNGD 91


>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase isoform 1, Citrus
           unshiu, PIR:S72648
          Length = 894

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 69  SVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK 221
           S SD+PS  L+D+  ++ +LK  L+G  +     VDTN       AED A E+
Sbjct: 532 SDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN-----LDAEDRAAER 579


>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
           similarity to DNA polymerase kappa [Mus musculus]
           GI:14279087; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 785

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 224 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGE 99
           GL  G++    + +++    +T +AGV A  L  +VC D+ +
Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINK 255


>At5g20540.1 68418.m02439 expressed protein
          Length = 384

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 72  VSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 218
           ++ TP +  +    T+  S      +S  RD D +E++ + +A DV  E
Sbjct: 282 LNSTPKVSSISVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDNE 330


>At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794:
           Domain of Unknown function
          Length = 350

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 242 RYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFL 352
           R++ +      H E +EK+ LP  +A E  KEK K L
Sbjct: 260 RFKSLQMMCKTHFEEEEKDLLPMVEAAEMGKEKQKKL 296


>At3g46750.1 68416.m05075 hypothetical protein 
          Length = 415

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
 Frame = +2

Query: 122 EESARRLQHQLSP*RRHQ*KDCASVC*RRRH*EDPEVFIRRYREVDSSQLKHTETQEKNP 301
           ++ A++LQH LS  +RH  +  A++    R  ED EV     REV  + L   +  +   
Sbjct: 67  KDKAKKLQHSLSTKKRHDEEGDATMSPFCRS-EDHEV-----REVGYASLSPRDKSKDRK 120

Query: 302 LPDKDAIEAEKEKNKFLNGIENFD----PTXLKHT--ETXEKNPLLTK 427
           + ++   E E+E  ++L G   ++    P  LK T  +   +NP++T+
Sbjct: 121 VREEGG-EEEEEDPEYL-GAPMYESKKAPEELKETARQHPRENPVITE 166


>At3g10720.2 68416.m01291 pectinesterase, putative contains
           similarity to pectinesterase from Vitis vinifera
           GI:15081598, Prunus persica SP|Q43062; contains Pfam
           profile PF01095 pectinesterase
          Length = 619

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +1

Query: 31  LPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--- 201
           LP +  ++S +  P  + PP    P  P +    S++ +P+++  STP  +LC  +L   
Sbjct: 43  LPFEPPVESPFFPP--SQPPIFVPPSQPPS-LPPSQSQSPSLACKSTPYPKLCRTILNAV 99

Query: 202 KTSP 213
           K+SP
Sbjct: 100 KSSP 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,369,406
Number of Sequences: 28952
Number of extensions: 186911
Number of successful extensions: 648
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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