BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0832 (508 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 32 0.26 At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 30 1.0 At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 1.8 At1g51900.1 68414.m05850 hypothetical protein 29 2.4 At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 28 3.1 At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran... 28 3.1 At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 28 4.2 At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low... 27 5.5 At5g20540.1 68418.m02439 expressed protein 27 7.3 At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794... 27 7.3 At3g46750.1 68416.m05075 hypothetical protein 27 9.6 At3g10720.2 68416.m01291 pectinesterase, putative contains simil... 27 9.6 >At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30) nearly identical to SF2/ASF-like splicing modulator Srp30 [Arabidopsis thaliana] GI:4775270 Length = 268 Score = 31.9 bits (69), Expect = 0.26 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = +1 Query: 100 SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRS*FEPAE 273 SP ++ R S++ P+ S +S R + ++ PL R RSLYS+VSRS Sbjct: 193 SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQSRSKS 252 Query: 274 AHRDSGEEPAS 306 R P S Sbjct: 253 RSRSRSNSPVS 263 >At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing protein contains Pfam profile PF01388: ARID/BRIGHT DNA binding domain Length = 786 Score = 29.9 bits (64), Expect = 1.0 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Frame = +3 Query: 57 TMACSVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQ 227 T S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E Sbjct: 74 TSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIV 133 Query: 228 KS 233 S Sbjct: 134 SS 135 >At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain PF04931: DNA polymerase V Length = 1306 Score = 29.1 bits (62), Expect = 1.8 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +2 Query: 278 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 373 TE E + LPD ++ +K K + +N + N+D Sbjct: 12 TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43 >At1g51900.1 68414.m05850 hypothetical protein Length = 774 Score = 28.7 bits (61), Expect = 2.4 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +2 Query: 221 DPEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEK 334 DP+++IR Y E + K + T + + + D+IE K Sbjct: 362 DPDIYIRSYEESPNEVYKFSLTDLEEEIMENDSIEGVK 399 >At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein contains putative undecaprenyl diphosphate synthase domain [PF01255]; similar to S. cerevisiae dehydrodolichyl diphosphate synthetase (DEDOL-PP synthase)(Rer2)[SP|P35196], a cis-prenyltransferase Length = 271 Score = 28.3 bits (60), Expect = 3.1 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = -3 Query: 221 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 102 ++ G+ +KHNL IG+D AG + + LQ C ++G Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79 >At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltransferase family protein similar to N2,N2-dimethylguanosine tRNA methyltransferase [Homo sapiens] GI:11066198; contains Pfam profile PF02005: N2,N2-dimethylguanosine tRNA methyltransferase Length = 599 Score = 28.3 bits (60), Expect = 3.1 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +2 Query: 227 EVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 373 E +R +E ++ K T K + +KDA EA KE+ NG+ N D Sbjct: 45 EFLSKRKQEHEAKSSKRTRPASK--VIEKDASEASKEETPSENGMNNGD 91 >At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative similar to sucrose-phosphate synthase isoform 1, Citrus unshiu, PIR:S72648 Length = 894 Score = 27.9 bits (59), Expect = 4.2 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Frame = +3 Query: 69 SVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK 221 S SD+PS L+D+ ++ +LK L+G + VDTN AED A E+ Sbjct: 532 SDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN-----LDAEDRAAER 579 >At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low similarity to DNA polymerase kappa [Mus musculus] GI:14279087; contains Pfam profile PF00817: ImpB/MucB/SamB family Length = 785 Score = 27.5 bits (58), Expect = 5.5 Identities = 12/42 (28%), Positives = 23/42 (54%) Frame = -3 Query: 224 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGE 99 GL G++ + +++ +T +AGV A L +VC D+ + Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINK 255 >At5g20540.1 68418.m02439 expressed protein Length = 384 Score = 27.1 bits (57), Expect = 7.3 Identities = 13/49 (26%), Positives = 24/49 (48%) Frame = +3 Query: 72 VSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 218 ++ TP + + T+ S +S RD D +E++ + +A DV E Sbjct: 282 LNSTPKVSSISVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDNE 330 >At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794: Domain of Unknown function Length = 350 Score = 27.1 bits (57), Expect = 7.3 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +2 Query: 242 RYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFL 352 R++ + H E +EK+ LP +A E KEK K L Sbjct: 260 RFKSLQMMCKTHFEEEEKDLLPMVEAAEMGKEKQKKL 296 >At3g46750.1 68416.m05075 hypothetical protein Length = 415 Score = 26.6 bits (56), Expect = 9.6 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 6/108 (5%) Frame = +2 Query: 122 EESARRLQHQLSP*RRHQ*KDCASVC*RRRH*EDPEVFIRRYREVDSSQLKHTETQEKNP 301 ++ A++LQH LS +RH + A++ R ED EV REV + L + + Sbjct: 67 KDKAKKLQHSLSTKKRHDEEGDATMSPFCRS-EDHEV-----REVGYASLSPRDKSKDRK 120 Query: 302 LPDKDAIEAEKEKNKFLNGIENFD----PTXLKHT--ETXEKNPLLTK 427 + ++ E E+E ++L G ++ P LK T + +NP++T+ Sbjct: 121 VREEGG-EEEEEDPEYL-GAPMYESKKAPEELKETARQHPRENPVITE 166 >At3g10720.2 68416.m01291 pectinesterase, putative contains similarity to pectinesterase from Vitis vinifera GI:15081598, Prunus persica SP|Q43062; contains Pfam profile PF01095 pectinesterase Length = 619 Score = 26.6 bits (56), Expect = 9.6 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Frame = +1 Query: 31 LPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--- 201 LP + ++S + P + PP P P + S++ +P+++ STP +LC +L Sbjct: 43 LPFEPPVESPFFPP--SQPPIFVPPSQPPS-LPPSQSQSPSLACKSTPYPKLCRTILNAV 99 Query: 202 KTSP 213 K+SP Sbjct: 100 KSSP 103 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,369,406 Number of Sequences: 28952 Number of extensions: 186911 Number of successful extensions: 648 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 616 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 648 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 908059136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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