Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0831
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.5  
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.9  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    26   5.9  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    25   7.8  

>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 522 FAVNFNSSNGSFTSQG*HSVQTYMKELFPQLFRTE 418
           F VN NSS+G   ++G HS+    K   PQLF  E
Sbjct: 404 FHVN-NSSSGHNDNEGNHSLILSSKTKSPQLFNNE 437


>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 159

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +1

Query: 355 EKDMKAHFI----VHDKFEETKYEVFSPEELWKQFLH 453
           E D K H I    + D+FEE   + F P + +K+ +H
Sbjct: 59  ESDEKFHPICIDNIPDEFEEIDAKTFDPHQKYKKVIH 95


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 86  LSKIDTTESTGCLYGLMYDGTLLVVGFSLESFET 187
           +S +DTT + GCL G +Y G   +  F   SF T
Sbjct: 183 ISCLDTTNAVGCL-GTLY-GQYCIFNFKNGSFST 214


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 100 VDFRQPLNNIT*YFKTCSPGDPLV 29
           +D+R+PL++I  Y+   +PG  L+
Sbjct: 738 MDWREPLHDIIQYYSERTPGSSLI 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,355
Number of Sequences: 5004
Number of extensions: 56444
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)