Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0831
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-1|AAA28094.1|   84|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical pr...    31   0.77 
U42846-2|AAA83601.1|  108|Caenorhabditis elegans Hypothetical pr...    29   4.1  
EF584656-1|ABQ57414.1|  500|Caenorhabditis elegans LAD-2 short i...    28   5.4  
EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long is...    28   5.4  
AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobuli...    28   5.4  
AC024817-51|AAP68914.1|  496|Caenorhabditis elegans L1 cam adhes...    28   5.4  
AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhes...    28   5.4  

>L14331-1|AAA28094.1|   84|Caenorhabditis elegans Hypothetical
           protein K12H4.6 protein.
          Length = 84

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 519 QNKRKKIASGQVSFHIDSTQVYLFGV--ASDVGLTGTSTEATVGGLVDSMSPETAIXG 686
           + K  K  +G  + H+   Q  L  V   S +  TG+ST AT+GG     S  TA+ G
Sbjct: 19  KGKFVKARTGMATAHLLQFQPQLLPVNFTSTMTPTGSSTTATIGGATTGASTTTAVTG 76


>Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical
           protein F56H9.1 protein.
          Length = 319

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 411 IFRFFKFIMNNKVSFHILLTIYYYN*WVICNIYIL 307
           +F FFKF+   K SF+IL T    + +++  +Y L
Sbjct: 27  LFMFFKFLSYEKTSFYILCTSKTLSNFILLTVYFL 61


>U42846-2|AAA83601.1|  108|Caenorhabditis elegans Hypothetical
           protein T19D2.3 protein.
          Length = 108

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +1

Query: 226 FPRRDRTLRRVKFGETLTTDSTTKEILQDVDI-TDNPLIIIINREKDM 366
           +  R R LRR   GE    D    ++  DVDI  D P   I N   D+
Sbjct: 58  YKARQRRLRRKALGEDDDDDDDDDDVDNDVDIDEDEPQTTITNSSPDL 105


>EF584656-1|ABQ57414.1|  500|Caenorhabditis elegans LAD-2 short
           isoform protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 226 FPRRDRTLRRVKFGETLTTDST 291
           FP+RD  L RVK GE+LT + T
Sbjct: 128 FPKRDVKLLRVKEGESLTLNCT 149


>EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long
           isoform protein.
          Length = 1187

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 226 FPRRDRTLRRVKFGETLTTDST 291
           FP+RD  L RVK GE+LT + T
Sbjct: 128 FPKRDVKLLRVKEGESLTLNCT 149


>AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobulin
           domain-containingprotein Y54G2A.25 protein.
          Length = 1187

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 226 FPRRDRTLRRVKFGETLTTDST 291
           FP+RD  L RVK GE+LT + T
Sbjct: 128 FPKRDVKLLRVKEGESLTLNCT 149


>AC024817-51|AAP68914.1|  496|Caenorhabditis elegans L1 cam adhesion
           molecule homologprotein 2, isoform b protein.
          Length = 496

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 226 FPRRDRTLRRVKFGETLTTDST 291
           FP+RD  L RVK GE+LT + T
Sbjct: 128 FPKRDVKLLRVKEGESLTLNCT 149


>AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhesion
           molecule homologprotein 2, isoform a protein.
          Length = 1187

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 226 FPRRDRTLRRVKFGETLTTDST 291
           FP+RD  L RVK GE+LT + T
Sbjct: 128 FPKRDVKLLRVKEGESLTLNCT 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,481,810
Number of Sequences: 27780
Number of extensions: 320027
Number of successful extensions: 839
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)