BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0831 (687 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value L14331-1|AAA28094.1| 84|Caenorhabditis elegans Hypothetical pr... 31 0.58 Z74473-2|CAA98949.2| 319|Caenorhabditis elegans Hypothetical pr... 31 0.77 U42846-2|AAA83601.1| 108|Caenorhabditis elegans Hypothetical pr... 29 4.1 EF584656-1|ABQ57414.1| 500|Caenorhabditis elegans LAD-2 short i... 28 5.4 EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long is... 28 5.4 AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobuli... 28 5.4 AC024817-51|AAP68914.1| 496|Caenorhabditis elegans L1 cam adhes... 28 5.4 AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhes... 28 5.4 >L14331-1|AAA28094.1| 84|Caenorhabditis elegans Hypothetical protein K12H4.6 protein. Length = 84 Score = 31.5 bits (68), Expect = 0.58 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Frame = +3 Query: 519 QNKRKKIASGQVSFHIDSTQVYLFGV--ASDVGLTGTSTEATVGGLVDSMSPETAIXG 686 + K K +G + H+ Q L V S + TG+ST AT+GG S TA+ G Sbjct: 19 KGKFVKARTGMATAHLLQFQPQLLPVNFTSTMTPTGSSTTATIGGATTGASTTTAVTG 76 >Z74473-2|CAA98949.2| 319|Caenorhabditis elegans Hypothetical protein F56H9.1 protein. Length = 319 Score = 31.1 bits (67), Expect = 0.77 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -1 Query: 411 IFRFFKFIMNNKVSFHILLTIYYYN*WVICNIYIL 307 +F FFKF+ K SF+IL T + +++ +Y L Sbjct: 27 LFMFFKFLSYEKTSFYILCTSKTLSNFILLTVYFL 61 >U42846-2|AAA83601.1| 108|Caenorhabditis elegans Hypothetical protein T19D2.3 protein. Length = 108 Score = 28.7 bits (61), Expect = 4.1 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Frame = +1 Query: 226 FPRRDRTLRRVKFGETLTTDSTTKEILQDVDI-TDNPLIIIINREKDM 366 + R R LRR GE D ++ DVDI D P I N D+ Sbjct: 58 YKARQRRLRRKALGEDDDDDDDDDDVDNDVDIDEDEPQTTITNSSPDL 105 >EF584656-1|ABQ57414.1| 500|Caenorhabditis elegans LAD-2 short isoform protein. Length = 500 Score = 28.3 bits (60), Expect = 5.4 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +1 Query: 226 FPRRDRTLRRVKFGETLTTDST 291 FP+RD L RVK GE+LT + T Sbjct: 128 FPKRDVKLLRVKEGESLTLNCT 149 >EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long isoform protein. Length = 1187 Score = 28.3 bits (60), Expect = 5.4 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +1 Query: 226 FPRRDRTLRRVKFGETLTTDST 291 FP+RD L RVK GE+LT + T Sbjct: 128 FPKRDVKLLRVKEGESLTLNCT 149 >AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobulin domain-containingprotein Y54G2A.25 protein. Length = 1187 Score = 28.3 bits (60), Expect = 5.4 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +1 Query: 226 FPRRDRTLRRVKFGETLTTDST 291 FP+RD L RVK GE+LT + T Sbjct: 128 FPKRDVKLLRVKEGESLTLNCT 149 >AC024817-51|AAP68914.1| 496|Caenorhabditis elegans L1 cam adhesion molecule homologprotein 2, isoform b protein. Length = 496 Score = 28.3 bits (60), Expect = 5.4 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +1 Query: 226 FPRRDRTLRRVKFGETLTTDST 291 FP+RD L RVK GE+LT + T Sbjct: 128 FPKRDVKLLRVKEGESLTLNCT 149 >AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhesion molecule homologprotein 2, isoform a protein. Length = 1187 Score = 28.3 bits (60), Expect = 5.4 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +1 Query: 226 FPRRDRTLRRVKFGETLTTDST 291 FP+RD L RVK GE+LT + T Sbjct: 128 FPKRDVKLLRVKEGESLTLNCT 149 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,481,810 Number of Sequences: 27780 Number of extensions: 320027 Number of successful extensions: 839 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 779 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 839 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1571291122 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -