Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0831
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26280.1 68415.m03154 smr (Small MutS Related) domain-contain...    30   1.3  
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family...    29   2.2  
At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein con...    28   6.7  
At3g53350.3 68416.m05888 myosin heavy chain-related low similari...    28   6.7  
At3g53350.2 68416.m05887 myosin heavy chain-related low similari...    28   6.7  
At3g53350.1 68416.m05886 myosin heavy chain-related low similari...    28   6.7  

>At2g26280.1 68415.m03154 smr (Small MutS Related) domain-containing
           protein weak similarity to PRLI-interacting factor N
           [Arabidopsis thaliana] GI:11139276; contains Pfam
           profile PF01713: Smr domain
          Length = 567

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/29 (44%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
 Frame = +3

Query: 48  LQVLKYQVMLLRGCLKSTQQRVQ-DVCMG 131
           LQVLK+++ +LR   ++TQ+R+Q  +C+G
Sbjct: 496 LQVLKHELSVLRSTARATQERLQIYICVG 524


>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 589

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 364 MKAHFIVHDKFEETKYEVFSPEELWKQFLHVRLNTVLPL 480
           +K   I  DK + TKY + S E+LWK  + V  +  +PL
Sbjct: 211 LKLMTIKRDKDQFTKYTITSLEKLWKPKIFVEPDLGIPL 249


>At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein
           contains Pfam profile PF05602: Cleft lip and palate
           transmembrane protein 1 (CLPTM1)
          Length = 590

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 131 LMYDGTLLVVGFSLESFETETEKNSYSQLLLNFPAEIELCG 253
           L Y   LLVVGFS+ S   E  K+ YS +L +  + + + G
Sbjct: 447 LSYVLLLLVVGFSIYSLAYERHKSWYSWILSSLTSCVYMFG 487


>At3g53350.3 68416.m05888 myosin heavy chain-related low similarity
           to filamin-interacting protein S-FILIP [Rattus
           norvegicus] GI:21392397, nonmuscle heavy chain myosin
           II-A [Mus musculus] GI:17978023
          Length = 394

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 235 RDRTLRRVKFGETLTTDSTTKEILQDVDITDNPLIIIINREKDMKAH-FIVHDKFEETKY 411
           R   LR++      T  S  + + +   +    L   IN  + +K+  F    + E++KY
Sbjct: 123 RIEELRKLSQERDKTWQSELEAMQRQHGMDSTALSSAINEVQKLKSKLFESESELEQSKY 182

Query: 412 EVFSPEELWKQFLHVRLNT 468
           EV S E+L +Q    R+N+
Sbjct: 183 EVRSLEKLVRQLEEERVNS 201


>At3g53350.2 68416.m05887 myosin heavy chain-related low similarity
           to filamin-interacting protein S-FILIP [Rattus
           norvegicus] GI:21392397, nonmuscle heavy chain myosin
           II-A [Mus musculus] GI:17978023
          Length = 394

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 235 RDRTLRRVKFGETLTTDSTTKEILQDVDITDNPLIIIINREKDMKAH-FIVHDKFEETKY 411
           R   LR++      T  S  + + +   +    L   IN  + +K+  F    + E++KY
Sbjct: 123 RIEELRKLSQERDKTWQSELEAMQRQHGMDSTALSSAINEVQKLKSKLFESESELEQSKY 182

Query: 412 EVFSPEELWKQFLHVRLNT 468
           EV S E+L +Q    R+N+
Sbjct: 183 EVRSLEKLVRQLEEERVNS 201


>At3g53350.1 68416.m05886 myosin heavy chain-related low similarity
           to filamin-interacting protein S-FILIP [Rattus
           norvegicus] GI:21392397, nonmuscle heavy chain myosin
           II-A [Mus musculus] GI:17978023
          Length = 396

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 235 RDRTLRRVKFGETLTTDSTTKEILQDVDITDNPLIIIINREKDMKAH-FIVHDKFEETKY 411
           R   LR++      T  S  + + +   +    L   IN  + +K+  F    + E++KY
Sbjct: 125 RIEELRKLSQERDKTWQSELEAMQRQHGMDSTALSSAINEVQKLKSKLFESESELEQSKY 184

Query: 412 EVFSPEELWKQFLHVRLNT 468
           EV S E+L +Q    R+N+
Sbjct: 185 EVRSLEKLVRQLEEERVNS 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,367,470
Number of Sequences: 28952
Number of extensions: 283832
Number of successful extensions: 693
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)