Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0830
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    26   2.3  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    26   2.3  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.2  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   5.2  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    24   6.9  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    24   6.9  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    24   9.1  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    24   9.1  

>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 238 ENDRSELVEVLIGEVHVRIRVYFSPDAN 155
           E+   E++E   GE  + +R++F+P+A+
Sbjct: 76  ESPPFEVIETGWGEFDIMVRIFFAPEAH 103


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +2

Query: 77  GGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLIIVGIM 256
           GG+    +L F + ++FA T  ++LI+ +R  +   P     D +  K    +   +GI+
Sbjct: 351 GGIGSSDFLNFLYGIIFAGTAGMMLILSLRVIL---PEALRHDHSENKRHSFICFTIGIL 407

Query: 257 F 259
           F
Sbjct: 408 F 408


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 310 MIITFSVFLLIIFVAELAVGIA 375
           MI TFSV  L++ +  +A+G A
Sbjct: 265 MITTFSVITLLLLLFTIAIGFA 286


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 350 TNMIKRNTENVIIMQWFSLTAPQQPKN 270
           TN +  N+E +II+ W     P+ PKN
Sbjct: 52  TNQV--NSEGLIIVTWDGEDDPENPKN 76


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 98  YLMFCFNLLFAITGLIILIVGI 163
           +++FCF   F ITG+   I+ I
Sbjct: 256 FIIFCFLSSFIITGVFFFIMSI 277


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 111 QNMRYFTQDIPPSRAIVIQLNITAKLYY 28
           Q+  Y  QD  P R  +I + I A LY+
Sbjct: 117 QHESYMRQDQQPDRRKIIDMRIHACLYF 144


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = -2

Query: 165 LMPTIRMINPVMANRRLKQNMRYFTQDIPPSRAIVIQLN 49
           ++P ++  NP + NR        F  + PP+    + L+
Sbjct: 119 VLPILQRFNPELFNRSSDNETPLFPNNSPPASTTALNLS 157


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 282 LWRCQREPLHDNNVFSIPLD 341
           LW   R+PL+++  F I LD
Sbjct: 304 LWSKNRQPLNNSECFGINLD 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,004
Number of Sequences: 5004
Number of extensions: 28656
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)