Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0830
(379 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 48 2e-06
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 39 0.001
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 38 0.002
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 38 0.002
U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin fam... 38 0.003
U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin fam... 34 0.029
AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical ... 34 0.029
Z92824-4|CAB07307.2| 395|Caenorhabditis elegans B0413.2 protein. 34 0.039
AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical ... 34 0.039
Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical pr... 27 3.4
AF039040-2|AAO91670.1| 615|Caenorhabditis elegans Hypothetical ... 27 4.5
AF039040-1|AAB94184.1| 553|Caenorhabditis elegans Hypothetical ... 27 4.5
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 48.4 bits (110), Expect = 2e-06
Identities = 16/39 (41%), Positives = 28/39 (71%)
Frame = +1
Query: 262 IVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAG 378
++ F GCCGA++EN+C+ ++F+V L ++ E+A I G
Sbjct: 65 LLGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIG 103
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +2
Query: 71 LEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFT-DENFYKFAPIVLIIV 247
+EGG++ VKYL+F NL+ + GL ++IVG ++ ++ DE PI+L+++
Sbjct: 2 VEGGVTIVKYLLFLANLVLWVGGLSLIIVGSILQLKFDNVLDILGDERL--ATPILLLVI 59
Query: 248 G 250
G
Sbjct: 60 G 60
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 38.7 bits (86), Expect = 0.001
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGI 372
+ +V +FGC GA K N C + F L++ F ELA +
Sbjct: 67 IILVGYFGCIGAWKMNQCALAFFCCILILAFFLELAAAV 105
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +2
Query: 89 CVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDE--NFYKFAPIVLIIVGIM 256
CVKY +F FN++F + G +L+ G+ A+I ++N + Y L+IVG +
Sbjct: 37 CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVNMLSKASKLYLDPTWPLLIVGFL 94
Score = 36.7 bits (81), Expect = 0.006
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 259 FIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGI 372
FI+ F GC G+++EN + +S L ++ +AE + G+
Sbjct: 96 FIIGFSGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGV 133
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGI 372
V +VAF GCCGA KE ++ +S L++I ++A I
Sbjct: 93 VIVVAFLGCCGAAKEWRPLLCCYSSCLMLILAIQIAATI 131
Score = 33.1 bits (72), Expect = 0.068
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 62 TMALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 196
TM L +K+ +F FNL+F + GLI L +G+ ++ Y N
Sbjct: 8 TMPLSCTARALKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDN 52
>U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin family
protein 17 protein.
Length = 243
Score = 37.5 bits (83), Expect = 0.003
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +1
Query: 211 LLQVRSDRSHHCRHYVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVG 369
LL+ + S C +V F G CGAV + +++ F +FL+ F+A++A+G
Sbjct: 22 LLKASAYVSLVCGCAQLLVGFLGLCGAVNRSRFLLLAFVMFLIGTFLADVAMG 74
>U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin family
protein 9 protein.
Length = 233
Score = 34.3 bits (75), Expect = 0.029
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGI 372
+F+V FFGCCGA E+ ++ F ++I+ EL +
Sbjct: 78 LFLVGFFGCCGAGCESPVLLGLFIFIIVILTAVELGATV 116
>AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical
protein Y39B6A.6 protein.
Length = 321
Score = 34.3 bits (75), Expect = 0.029
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGI 372
+ +VA GCCG + +I +S+ + ++ VA L+ GI
Sbjct: 124 MMVVAMLGCCGITGRSRPFLIIYSMVVFLLLVATLSCGI 162
>Z92824-4|CAB07307.2| 395|Caenorhabditis elegans B0413.2 protein.
Length = 395
Score = 33.9 bits (74), Expect = 0.039
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGI 372
+ +VA GCCG + +I +S+ + ++ VA L+ GI
Sbjct: 235 MMVVAMXGCCGITGRSRPFLIIYSMVVFLLLVATLSCGI 273
>AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical
protein Y39E4B.4 protein.
Length = 223
Score = 33.9 bits (74), Expect = 0.039
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +1
Query: 262 IVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGI 372
I+ F G GAV + ++ + +F++I+F+ E+A+GI
Sbjct: 83 IIGFVGVIGAVIRSKYLLAPYFLFMVILFLLEIAIGI 119
>Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical
protein F30A10.5 protein.
Length = 327
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -2
Query: 180 EFISALMPTIRMINPVMANRRLKQNMRYFTQDIPPSRAIVI---QLNITAKLY 31
+F L P + + P++ + QN+R +IP AI I QL + LY
Sbjct: 54 KFYKILEPGLNFLLPIIDKIKFVQNLREIAIEIPEQGAITIDNVQLRLDGVLY 106
>AF039040-2|AAO91670.1| 615|Caenorhabditis elegans Hypothetical
protein T22B11.4b protein.
Length = 615
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Frame = -1
Query: 253 NADNDENDRSELVEVLIGEV------HVRIRVYFSPD 161
N+D DE++ S VE++ GE + R+Y+SPD
Sbjct: 451 NSDEDEDEESTTVELVEGETPDPSEQNFLQRIYYSPD 487
>AF039040-1|AAB94184.1| 553|Caenorhabditis elegans Hypothetical
protein T22B11.4a protein.
Length = 553
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Frame = -1
Query: 253 NADNDENDRSELVEVLIGEV------HVRIRVYFSPD 161
N+D DE++ S VE++ GE + R+Y+SPD
Sbjct: 451 NSDEDEDEESTTVELVEGETPDPSEQNFLQRIYYSPD 487
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,534,059
Number of Sequences: 27780
Number of extensions: 162717
Number of successful extensions: 569
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -