BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0829 (351 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom... 26 2.0 SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 24 7.9 >SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 220 Score = 25.8 bits (54), Expect = 2.0 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = -3 Query: 88 LVNVLASEPTQRTTK-AKIINFCISIVSFD 2 L N L++ + TK AK++NFCI I F+ Sbjct: 63 LFNSLSARTFRNLTKCAKVVNFCILISLFN 92 >SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schizosaccharomyces pombe|chr 3|||Manual Length = 524 Score = 23.8 bits (49), Expect = 7.9 Identities = 12/51 (23%), Positives = 28/51 (54%) Frame = +3 Query: 102 HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYW 254 + RK ++NL+RN++ L + R++ +N + DY + +++Y+ Sbjct: 473 YHFRKPRDQDNLLRNYIRLRDDIKRRESKISNPPESLLHDY--YACSEQYY 521 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,308,991 Number of Sequences: 5004 Number of extensions: 23078 Number of successful extensions: 68 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 68 length of database: 2,362,478 effective HSP length: 64 effective length of database: 2,042,222 effective search space used: 106195544 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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