Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0829
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1046 - 9138000-9138293,9139550-9139714,9139862-9140010,914... 28 2.4
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 27 3.1
05_07_0028 + 27153663-27153932,27154966-27155175,27156220-271564... 27 4.1
04_01_0374 + 4914864-4914947,4915094-4915217,4921146-4921471,492... 27 5.5
12_02_0938 - 24576419-24576719,24576817-24576969,24577052-245778... 26 7.2
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471... 26 9.6
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295... 26 9.6
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 26 9.6
>07_01_1046 -
9138000-9138293,9139550-9139714,9139862-9140010,
9140363-9140510,9140659-9140727,9140827-9141087,
9141498-9141692,9142932-9143048,9143701-9144477
Length = 724
Score = 27.9 bits (59), Expect = 2.4
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 107 AEETWLRRKSHEELGMSGRAREQP*HVQDEHEP*RLEGLRIVPD-QRPVLGSKGASP 274
AEE W R S E + M G P +V+ + + G PD VLG+ + P
Sbjct: 663 AEENWARYVSPEMVNMRGHLMRYPINVERDGRVGPVHGYECFPDVGGKVLGTHSSLP 719
>02_05_0640 -
30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 27.5 bits (58), Expect = 3.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 184 VSRLLSCSTRHTQFLMRFSSKPCFLSSCTRPHLV-NVLASEPTQRTTKAKIINF 26
V +L S T Q ++R + L+ R +V N L+S+P + T KII+F
Sbjct: 476 VDKLASRVTNSDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISF 529
>05_07_0028 +
27153663-27153932,27154966-27155175,27156220-27156414,
27156491-27156840,27157198-27157423,27157524-27157692,
27158145-27158990,27159647-27159818,27159934-27160052,
27160117-27160155,27161033-27161157,27161250-27161309,
27161471-27161542,27161980-27162114
Length = 995
Score = 27.1 bits (57), Expect = 4.1
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -3
Query: 331 CLSNVVSQEVGALNVAVFAWTGAFAAQYRSLIWNNP*SFEPLRFVFVLDVSRLLSCSTRH 152
CL +V E L VFAW G A + S + +P S +R +D + CS H
Sbjct: 212 CLHKIVPDEK-LLQQVVFAWIGGEAVKTISHDFCSPCSKSNVRCKDAIDQTDKYGCSHEH 270
>04_01_0374 +
4914864-4914947,4915094-4915217,4921146-4921471,
4921527-4921658,4921824-4922362,4922445-4922597,
4922695-4922995
Length = 552
Score = 26.6 bits (56), Expect = 5.5
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +3
Query: 108 LRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWAAKAPVQAK 281
L H +E +MR+W+ LV + + T N N SKDY +I A P K
Sbjct: 443 LWSHQDKEYIMRHWILLV--IVPKWSRVTYLNSNKSKDYDFTEITKALNMAWGPYVEK 498
>12_02_0938 -
24576419-24576719,24576817-24576969,24577052-24577884,
24577966-24578427,24578506-24579213
Length = 818
Score = 26.2 bits (55), Expect = 7.2
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +3
Query: 117 HGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWAAKAPVQAK 281
H +E +MR+W+ LV + + T N N SKDY +I A P K
Sbjct: 712 HQDKEYIMRHWILLV--IVPKWSRVTYLNSNKSKDYDFSEITKALNMAWGPYVEK 764
>08_02_0958 -
23044708-23046045,23046131-23046363,23047059-23047199,
23047296-23048334
Length = 916
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 304 VGALNVAVFAWTGAFAAQYRSLIWN 230
+GA +AV AW + Q LIWN
Sbjct: 445 LGAKEIAVRAWDQSHNTQPEKLIWN 469
>08_02_0956 +
23026108-23027146,23027255-23027395,23029334-23029566,
23029652-23030989
Length = 916
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 304 VGALNVAVFAWTGAFAAQYRSLIWN 230
+GA +AV AW + Q LIWN
Sbjct: 445 LGAKEIAVRAWDQSHNTQPEKLIWN 469
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 158 QTYPVPHEIFFEAMFPQLMHETAS 87
Q P+ HE++ EA +L++ETA+
Sbjct: 273 QEGPLSHEVYREASHAELIYETAT 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,821,722
Number of Sequences: 37544
Number of extensions: 158754
Number of successful extensions: 454
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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