Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0829
(351 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8) 29 0.80
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13) 29 1.1
SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 27 3.2
SB_27810| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07) 27 4.3
SB_29980| Best HMM Match : E-MAP-115 (HMM E-Value=1.3) 27 4.3
SB_59062| Best HMM Match : Brevenin (HMM E-Value=0.39) 27 4.3
SB_3579| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_56871| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.5
SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019) 26 7.5
SB_49297| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
Length = 283
Score = 29.5 bits (63), Expect = 0.80
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 120 GFEENLMRNWVCLVEHESSRDTSKTN 197
GFEE + R W+ + E S D +KTN
Sbjct: 33 GFEEEVKRQWIGCDKLEGSNDITKTN 58
>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
Length = 334
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 113 ETWLRRKSHEELGMSGRAREQP*HVQDEHEP 205
E WL RK H E +S RE+ V+++H+P
Sbjct: 223 EAWLERKEHREDSLSEHEREE---VKNKHKP 250
>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 1145
Score = 27.5 bits (58), Expect = 3.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -3
Query: 187 DVSRLLSCSTRHTQFLMRFSSK-PCFL--SSCTRPHLVNVLASEPTQRTTKAKIINFCIS 17
D + C++ Q L+ K PC SC + + +V A E Q TT AK ++ C S
Sbjct: 98 DQRKAKCCNSGEHQSLISEDEKLPCLSVKKSCFKEGIASVPAKETDQVTTTAKDVSDCCS 157
>SB_27810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 102 HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSK 218
H RKH F N+ R+ + HE+ ++ K + R +K
Sbjct: 61 HRRRKHIFRHNVRRSGISGESHENRKNKKKEHKKRMHAK 99
>SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)
Length = 717
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 90 CGLVHELRKHGFEENLMRNWVCLVEHESSRDTSKTNT 200
CG H L H EE +R + CL + S S +N+
Sbjct: 596 CGYGHALTDHVLEEMAVRKYACLEIMDVSYSNSISNS 632
>SB_29980| Best HMM Match : E-MAP-115 (HMM E-Value=1.3)
Length = 215
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 113 ETWLRRKSHEELGMSGRAREQP*HVQDEHEP*RLEGLR 226
E W+RRK E L RAR + +E R E LR
Sbjct: 162 EEWMRRKDQEALEREERARREAEQKYEEKRKRREEVLR 199
>SB_59062| Best HMM Match : Brevenin (HMM E-Value=0.39)
Length = 214
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 130 SSKPCFLSSCTRPHLVNVLASEPTQRTTKAKIINFCISIVS 8
SS PC+ RP L ++ + Q T A +I CI +++
Sbjct: 43 SSTPCWHILKDRPRLCEIIHGQKAQYTIIALVIIDCIIVIA 83
>SB_3579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 218 GLRIVPDQRPVLGSKGASPGKDCNVKCSDLLTDDITK 328
G++I+P + SP K N+K TDDI K
Sbjct: 54 GIKILPKSEGIPNGDHTSPLKISNIKVKQEPTDDILK 90
>SB_56871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 184 VSRLLSCSTRHTQFLMRFSS-KPCF 113
V + LSC RHT +++ SS +PC+
Sbjct: 157 VMQTLSCRPRHTDLVIQTSSYRPCY 181
>SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019)
Length = 1097
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 184 VSRLLSCSTRHTQFLMRFSS-KPCF 113
V + LSC RHT +++ SS +PC+
Sbjct: 51 VMQTLSCRPRHTDLVIQTSSYRPCY 75
>SB_49297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 90 CGLVHELRKHGFEENLMRNWVCLVEHESSRDTSK 191
CG EL++ +E + W+C E +D +K
Sbjct: 41 CGSCDELKQFKMDEIVKNCWLCCHEEGDGQDAAK 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,120,538
Number of Sequences: 59808
Number of extensions: 187988
Number of successful extensions: 475
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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